PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00082.23
Common NameAMTR_s00082p00116910, LOC18426766
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 569aa    MW: 63084.7 Da    PI: 6.0479
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00082.23genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.62.2e-48161411128
                                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkky 68 
                                              lppGf FhPtd elv++yLk k+ gk+ ++   i+evd+yk+ePwdLp+   +  + ++w+fF+ r kky
  evm_27.model.AmTr_v1.0_scaffold00082.23  16 LPPGFGFHPTDVELVSYYLKGKILGKNRDT---IPEVDLYKHEPWDLPEksDMPFRCSSWHFFCARGKKY 82 
                                              79*************************665...***************6234444777************ PP

                                      NAM  69 atgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                              ++g+r+nratk+g+Wkatgkd++v+  +++++g+kktLvf+ grap+g++tdW+mhey+l
  evm_27.model.AmTr_v1.0_scaffold00082.23  83 PNGSRTNRATKAGFWKATGKDRNVKF-RRRTIGTKKTLVFHAGRAPSGVRTDWLMHEYHL 141
                                              *************************9.8999****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-556164IPR003441NAC domain
PROSITE profilePS5100553.15716165IPR003441NAC domain
PfamPF023659.6E-2517141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MTFEYMGNTN GNIASLPPGF GFHPTDVELV SYYLKGKILG KNRDTIPEVD LYKHEPWDLP  60
EKSDMPFRCS SWHFFCARGK KYPNGSRTNR ATKAGFWKAT GKDRNVKFRR RTIGTKKTLV  120
FHAGRAPSGV RTDWLMHEYH LAKEECEAAA PGMKDAFVLC RVFKNDESGT SDDDGLEQNE  180
RHVAAQPTEG RSMNTPYGNS YDLVSDDLSI AMYLNSEAAF IPASGEYTSN QRVDPNPHIL  240
ELNDGVASSP LRIEDFPEIP FNLGIGDQST FFDHFSTSDP LSEHDIIEEI YDAITSASLS  300
GPSSTLPGDH GFTPSAYSEL YNPQVPDNVV DREEPEINVR YWPSGPESEI PGPRSRLQMH  360
KMQNRSTNRA ETYSYNKGAV GVLNGSGYSG SESSCDLQEQ LLLLEEFNSG LGNESKEIPM  420
SEPSLAPLGC YQVSAIFCKD EEPNSDQLIR EAHSYQTVTE MRDIFISDGS PFRKDSGSTV  480
AKVKSRQKGR KARRPPKENV SLTKKQVKKI IGDSGGQSNV EGFHSVSQRS VLSSLGACII  540
GAMLLFVYAY FMLCKIRKFV TGLCILGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-451516314166Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006833474.10.0NAC domain-containing protein 86 isoform X1
RefseqXP_011620621.10.0NAC domain-containing protein 86 isoform X1
RefseqXP_011620623.10.0NAC domain-containing protein 86 isoform X1
TrEMBLW1NSK10.0W1NSK1_AMBTC; Uncharacterized protein
STRINGERM987520.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.13e-66NAC domain containing protein 86
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]