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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
evm_27.model.AmTr_v1.0_scaffold00081.38 |
| Common Name | AMTR_s00081p00108570 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family |
C3H |
| Protein Properties |
Length: 346aa MW: 38720.3 Da PI: 8.4105 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00081.38 | genome | TAGP | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 25.8 | 1.8e-08 | 151 | 173 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26
++C+ ++ + C+yGdrC+F H+
evm_27.model.AmTr_v1.0_scaffold00081.38 151 RICKKYYNGEVCSYGDRCNFVHD 173
79******66************7 PP
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| 2 | zf-CCCH | 36.6 | 7.4e-12 | 234 | 259 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+ C+ + tG C++G++C+FaHg
evm_27.model.AmTr_v1.0_scaffold00081.38 234 WKTRMCNKWESTGSCPFGEKCHFAHG 259
8************************8 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF90229 | 2.22E-6 | 67 | 101 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.7E-4 | 69 | 96 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.3E-12 | 69 | 103 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.192 | 69 | 97 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 9.03E-7 | 147 | 173 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.018 | 149 | 174 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.0E-7 | 149 | 173 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.9E-6 | 151 | 173 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.765 | 152 | 175 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.5E-17 | 230 | 264 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.14E-10 | 230 | 264 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.4E-5 | 233 | 260 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.784 | 233 | 261 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.0E-8 | 234 | 259 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 346 aa
Download sequence Send
to blast |
MNPPSELWPP FSRNHPIMWP TDEDFEPQNP NPNFHPSKKL RLSFSFGDPN PIDPFPSRPR 60
GNPSYGRIFF KTKLCTRFQQ GNCPYTPNSC NYAHGVDDLR KPPPNWQQIV DSGASSAPLP 120
LFPFREEPTL PLPTPPQLLT WQENQRLHRL RICKKYYNGE VCSYGDRCNF VHDDLGRSRE 180
SLAISIGTNS NSGNGGSHVF ESLSNFSKKP VGLNATEGGN GGELNGSNLK PMFWKTRMCN 240
KWESTGSCPF GEKCHFAHGA AELQKYGVVM DTDIENSGLT PTSKPSHPST GVKNTSTLRR 300
SCELGQGQRG LSKWKGPEKI NRIYADWIDD NEWEHTARAQ VAEKA*
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