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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm_27.model.AmTr_v1.0_scaffold00079.58 |
| Common Name | AMTR_s00079p00140660, LOC18432143 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family |
MYB |
| Protein Properties |
Length: 294aa MW: 33812.8 Da PI: 7.8105 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00079.58 | genome | TAGP | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 54.1 | 3.5e-17 | 27 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT eEd ll+++++ +G g+W+ a++ g++Rt+k+c++rw++yl
evm_27.model.AmTr_v1.0_scaffold00079.58 27 RGPWTLEEDTLLIHYIACHGEGRWNMLAKYSGLKRTGKSCRLRWLNYL 74
89********************************************97 PP
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| 2 | Myb_DNA-binding | 54 | 3.9e-17 | 80 | 123 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
evm_27.model.AmTr_v1.0_scaffold00079.58 80 RGNLTPEEQLLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 123
7999******************.*********.***********96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 294 aa
Download sequence Send
to blast |
MACDSGSSGS KERSSSKYEE EGGDLRRGPW TLEEDTLLIH YIACHGEGRW NMLAKYSGLK 60
RTGKSCRLRW LNYLKPDIKR GNLTPEEQLL ILELHSKWGN RWSRIAQHLP GRTDNEIKNY 120
WRTRVQRQAR QLQCDANSAR FRETITCSWM PKLQKRENSS SSIPFSHLNP SIPTQSPQET 180
SQHIQPFLTH TNNPDQDQLS LEILRSSDSI MTTQFPSSEV QFNHEFFGRP ISQPFLKNYC 240
SDNYGTGSTS IMAKKSAPIN NCTISEQFMA QNNWVVNVSD DLWSMDEMWQ SVE*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP5 | 17 | 1784 |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Yang A,Dai X,Zhang WH
A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
J. Exp. Bot., 2012. 63(7): p. 2541-56
[PMID:22301384] - Amborella Genome Project
The Amborella genome and the evolution of flowering plants.
Science, 2013. 342(6165): p. 1241089
[PMID:24357323] - Chen X, et al.
The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
Plant Cell Physiol., 2014. 55(3): p. 604-19
[PMID:24399239] - Lv Y, et al.
New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
Plant Cell Environ., 2016. 39(3): p. 556-70
[PMID:26381647] - Hong Y,Zhang H,Huang L,Li D,Song F
Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
Front Plant Sci, 2016. 7: p. 4
[PMID:26834774]
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