 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
evm_27.model.AmTr_v1.0_scaffold00079.30 |
Common Name | AMTR_s00079p00088960, LOC18432113 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
|
Family |
LBD |
Protein Properties |
Length: 283aa MW: 30697.6 Da PI: 6.9668 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm_27.model.AmTr_v1.0_scaffold00079.30 | genome | TAGP | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 100.7 | 1.4e-31 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeA 65
+C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA
evm_27.model.AmTr_v1.0_scaffold00079.30 4 SCNGCRVLRKGCSENCSIRPCLqwiknPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEA 73
6********************************************************************* PP
DUF260 66 earardPvyGavgvilklqqqleqlkaelallke 99
+ r+ +P+yG+vg+++++++ql+q+++e++l ++
evm_27.model.AmTr_v1.0_scaffold00079.30 74 CGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGA 107
****************************998766 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 283 aa
Download sequence Send
to blast |
MRMSCNGCRV LRKGCSENCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLINAGPDH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIV QISTEAAANQ 120 GPAIAPLSSK PYDIRHVSKE ENTNTNSAAC ADLHKVKSRS RFKRSASKPK PKLEAEPVPE 180 PTDNELAQVC NLRWRRCYPG GFNGVDSDSS SQSEPTAEGD DSAFSAETVE VSLARRADSE 240 TDPDSRVEEI GLELTLGFEP APRTRVERHH SSEPVSDVTL GL*
|