PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

ERF

Protein Properties

Length: 206aa MW: 21919.6 Da PI: 10.3859

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00077.195	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.9	3.4e-20	39	87	3	55
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +gr++AeIrd ++ + r++lg+f+tae Aa+a++aa+++l+g evm_27.model.AmTr_v1.0_scaffold00077.195 39 FRGVRKRP-WGRFAAEIRDpWK----KSRVWLGTFDTAEAAARAYDAAARSLRG 87 8*****.******883....5***********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	4.7E-13	38	87	IPR001471	AP2/ERF domain
SMART	SM00380	2.9E-37	38	101	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.696	38	95	IPR001471	AP2/ERF domain
CDD	cd00018	2.58E-17	38	95	No hit	No description
SuperFamily	SSF54171	4.77E-22	39	96	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	5.6E-32	39	96	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-10	39	50	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-10	61	77	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MRKAGARGAA TADPSAAMPW PSSAAAAAGG TPKEVGIRFR GVRKRPWGRF AAEIRDPWKK 60 SRVWLGTFDT AEAAARAYDA AARSLRGPKA KTNFPLHHHP SSLPNIATTD APLPSLLPPS 120 NAAPAVSTST TLSSTVESFS RPRPPRLQSS KAPAVSQAHQ DPSHSDCDSS SSVVDDTRRP 180 LLFIDLNLPP RDEEDEELES VALRL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	6e-21	38	102	14	79	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:11487705, ECO:0000269\|PubMed:9756931}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00194	DAP	Transfer from AT1G50640	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:12805630}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006842613.1	1e-144	ethylene-responsive transcription factor 3
Swissprot	O80339	2e-34	ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBL	W1P8P0	1e-142	W1P8P0_AMBTC; Uncharacterized protein
STRING	ERN04288	1e-143	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50640.1	9e-26	ethylene responsive element binding factor 3

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00077.195
Entrez Gene	18432447

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]