 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
evm_27.model.AmTr_v1.0_scaffold00074.33 |
| Common Name | AMTR_s00074p00110430 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
|
| Family |
C3H |
| Protein Properties |
Length: 277aa MW: 29625.1 Da PI: 7.9149 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00074.33 | genome | TAGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 35.5 | 1.7e-11 | 75 | 101 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C +++rtG C yG++C+F+H+p
evm_27.model.AmTr_v1.0_scaffold00074.33 75 PGQPDCVYYLRTGMCGYGSNCRFNHPP 101
5789*********************97 PP
|
| 2 | zf-CCCH | 37.8 | 3.2e-12 | 118 | 142 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
+++ C++f++tGtCk+G++Ck++H+
evm_27.model.AmTr_v1.0_scaffold00074.33 118 GQPDCQYFLKTGTCKFGPTCKYHHP 142
6899********************8 PP
|
| 3 | zf-CCCH | 36.4 | 8.8e-12 | 163 | 188 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+++ C +++rtG Ck+G CkF+H++
evm_27.model.AmTr_v1.0_scaffold00074.33 163 GEKACAYYLRTGSCKFGVACKFNHPQ 188
6789********************97 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 15.206 | 74 | 102 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.0E-7 | 74 | 101 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.5E-7 | 76 | 101 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.01E-6 | 79 | 103 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.4E-5 | 80 | 101 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.732 | 116 | 144 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 6.5E-7 | 116 | 143 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 8.6E-10 | 118 | 142 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.1E-6 | 121 | 145 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.6E-4 | 122 | 142 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.145 | 161 | 189 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.1E-4 | 161 | 188 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.76E-6 | 163 | 189 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.1E-9 | 163 | 188 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.1E-5 | 165 | 187 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 277 aa
Download sequence Send
to blast |
MECGGVGEEE GKKSSVAGDA ASSLSSPMPQ NWQPHHQNAV SLSSPINHLQ EALWNLRIQG 60
HDSQERANTP YPERPGQPDC VYYLRTGMCG YGSNCRFNHP PDPRQVVLYR GELPERDGQP 120
DCQYFLKTGT CKFGPTCKYH HPSDRHESGP VPLNVSGLPV RQGEKACAYY LRTGSCKFGV 180
ACKFNHPQPA ALSPVLAVTG SSGYGSAGSS LSLPSGPPPY VGGLSAWTLP RGPYVSSPRL 240
QGSPTYMPII LSPSQGMISS PQGWSSYPVS SDTSNS*
|
