PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00074.125
Common NameAMTR_s00074p00197100
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 322aa    MW: 36762.7 Da    PI: 9.4505
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00074.125genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00155170221
                                              EETTTTEEESSHHHHHHHHH CS
                                   zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                                              +C  C+k F++   L  H+r
  evm_27.model.AmTr_v1.0_scaffold00074.125 51 VCALCTKKFPSMKALFGHMR 70
                                              6******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.265072IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.73E-75172No hitNo description
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
PfamPF139122.1E-65274IPR007087Zinc finger, C2H2
SuperFamilySSF576677.73E-7286313No hitNo description
SMARTSM003550.025291313IPR015880Zinc finger, C2H2-like
PfamPF139125.0E-8291313IPR007087Zinc finger, C2H2
PROSITE profilePS501579.847291318IPR007087Zinc finger, C2H2
PROSITE patternPS000280293313IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAYFFQDILG FTDSDKIGLK DEHERRKDGC RGERKSTTIE KTTKDTQQEP VCALCTKKFP  60
SMKALFGHMR CHPKRDWRKI QPPEKPVLAR KNERNLQKNI ILSLPSQIGW SLDLEQERTK  120
SESKDLQRQR FEGVSNSIKQ TVHHLPIVSQ SQGNLEELGF LEKQETDKES LESDPKKSEI  180
LHESFLVYRR GQWMKKTEVK REARAIETAA NSGTPQEGEI ISNCHDSKKR KLFIGVSATN  240
NSEEEEISQE DIQVSGIGSE ISVAFLKVSV NKRPKIGRIP DNFSPEMQGS HICTKCNQWF  300
NSGQALGGHM RKHFDRKKLL A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020520271.10.0LOW QUALITY PROTEIN: uncharacterized protein LOC18429799
TrEMBLW1NMA40.0W1NMA4_AMBTC; Uncharacterized protein
STRINGERM970070.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP706138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.11e-10C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]