PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00071.85
Common NameAMTR_s00071p00110320
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C3H
Protein Properties Length: 958aa    MW: 108489 Da    PI: 6.9635
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00071.85genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.2e-07199220426
                                              ---SGGGGTS--TTTTT-SS-SS CS
                                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                              + C++++  G C++G++C+F H+
  evm_27.model.AmTr_v1.0_scaffold00071.85 199 PVCKDYLG-GRCRRGSQCRFLHD 220
                                              78999999.*************7 PP
2zf-CCCH24.35.4e-08491511425
                                              ---SGGGGTS--TTTTT-SS-S CS
                                  zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                                              ++C+f+++ G C++G +CkF+H
  evm_27.model.AmTr_v1.0_scaffold00071.85 491 PPCKFYSK-GLCHRGTSCKFSH 511
                                              79******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.554195222IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-6195221IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-5199220IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-5199220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4200222IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.319283310IPR000571Zinc finger, CCCH-type
SMARTSM003562286309IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.788488514IPR000571Zinc finger, CCCH-type
SMARTSM003560.0099488513IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5490512IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-5491511IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 958 aa     Download sequence    Send to blast
MVYEPCREIP AENVNTEGPA PSPTLTPKDL RLESIASSEL SSSTLIANPL RNPVAKNARK  60
SSKWDLSVED LPKSEREHDN AEKWGSGWDS CSDSLKKSAI EEDSIAKSGS FSDRPSRENG  120
KRKRDENLSS AKAWSRDHGY NTSSISPGID TWMERSLSRS PRSGWNRSRR SRSRSPSHGG  180
KHEIDDRSDS WRGTRGSVPV CKDYLGGRCR RGSQCRFLHD DHRYDGGRPE RDRSERERYS  240
EDMDHETFSN LHGSNHRSHD TILQGYNSNY DSDGRRREVK RENRSSYQCY DFSVGKCYRG  300
SECRYIHHDA SDDRYDGRPS KEAPRERTHD RRDASMSLES DNNDKYGYPG ERSYNRRDPR  360
LYAERENYDK HRYPGERTHD RQDPRISFER EAYDKHGFPG ERTHDKQDDP PVSFERESRD  420
KHTYSGDRDH ELDTKRELSL SGENHDKHGY LGERNCGSGT GRELSFERES HDKLGYSGEG  480
NHGSGKVRDL PPCKFYSKGL CHRGTSCKFS HRGSVHESQS ESSRDDRRDS FSSGLDLPSS  540
GHLNQEQYHR QVERVTGINH KETRTNHVEV SNQIPKEDIK YPIGQTDNAN NMPTMIPDPQ  600
RSIDPNQQIL SQAPSNHHLQ NQLDPEETAN KSEERKGAMR ADVFSIQPSA RSVSQTGNQV  660
NQMPNLAASL AQIFGASQQV PPVYAAANPL SLGGLVPQGF SVYPDSVRPI EPVGPNPVQP  720
IQGLSAQNKQ YDPLSDSVEL IQPQIGQKEL GVILDFVKHQ GISAGRSLDP VPIETNESLS  780
MPNNDSERKT NEPLDHVGKL NSEKLGSAKG MELQEERENV GKLGEVRETS REVEEMKENV  840
GELTDRKNVG GEGVKDSEDR ARVEEESKRS KEEKGMRMFK FALVDFVKEL LKPTWKEGHM  900
SKEAHKTIVK KVVDKVTGTL QGPQIPNTQE KIDQYLSFSQ EKLTKLVQAY VEKYVKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011628568.10.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_011628569.10.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_020531713.10.0zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_020531714.10.0zinc finger CCCH domain-containing protein 38 isoform X1
TrEMBLU5DHH80.0U5DHH8_AMBTC; Uncharacterized protein
STRINGERN199380.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1027869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-14C3H family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]