PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

M-type_MADS

Protein Properties

Length: 115aa MW: 12615.6 Da PI: 10.4721

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00071.216	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	81.3	6.2e-26	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien rqvtf+kRr+g+lKKA ELS+LCda++ viifs++gkly+ s evm_27.model.AmTr_v1.0_scaffold00071.216 9 KRIENPVHRQVTFCKRRAGLLKKARELSTLCDADIGVIIFSTHGKLYDLS 58 79*********************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.6E-35	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.49E-29	1	77	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.072	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	5.63E-42	2	79	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-26	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.7E-24	10	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0048364	Biological Process	root development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MARGKVQLKR IENPVHRQVT FCKRRAGLLK KARELSTLCD ADIGVIIFST HGKLYDLSTN 60 GTMQELIERY MKSSHGAQTE QPENVNHPPA LGRSGQGSGC HMVTTRVPFS PGLK*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.
UniProt	Probable transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020531784.1	2e-60	MADS-box transcription factor 33
Swissprot	A2YQK9	6e-42	MAD26_ORYSI; MADS-box transcription factor 26
Swissprot	Q0J8G8	6e-42	MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBL	U5DC39	4e-80	U5DC39_AMBTC; Uncharacterized protein
STRING	ERN20069	7e-81	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71692.1	5e-39	AGAMOUS-like 12

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00071.216

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Lee S, et al. Further characterization of a rice AGL12 group MADS-box gene, OsMADS26. Plant Physiol., 2008. 147(1): p. 156-68 [PMID:18354041] Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Khong GN, et al. OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice. Plant Physiol., 2015. 169(4): p. 2935-49 [PMID:26424158]