PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00070.96

Common Name

AMTR_s00070p00154800, LOC18449071

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

ZF-HD

Protein Properties

Length: 219aa MW: 23851.1 Da PI: 9.4342

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00070.96	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	103.1	1.9e-32	47	99	5	58
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 Y+eClkNhAa++Ggha DGCgEfm++ geeg+++alkCaACgCHRnFHR+e + evm_27.model.AmTr_v1.0_scaffold00070.96 47 GYRECLKNHAAAIGGHANDGCGEFMAA-GEEGSIEALKCAACGCHRNFHRKEIS 99 6***********************9.999******************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	4.0E-29	47	98	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.2E-29	48	98	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	6.0E-22	48	97	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.682	48	97	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	5.74E-19	140	210	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-30	141	211	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	7.6E-26	150	206	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MMDLSVVPYS HNSPGNSSTG GGPKPEKNGG VLDPLDSPLS KPSYLIGYRE CLKNHAAAIG 60 GHANDGCGEF MAAGEEGSIE ALKCAACGCH RNFHRKEISV TPLPFSSPYL HNAAPTWDKK 120 LKFPPPLTRS IDNEGFTVFG QGGGTKNGTK RYRTKFTQDQ KEKMQAFADK LGWRIQKQDD 180 VALQQFCMEV GVKRHVLKVW MHNNKNTLGK KDSLTAST*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	5e-28	149	207	17	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006859182.1	1e-165	zinc-finger homeodomain protein 2
Swissprot	Q9SB61	5e-60	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	U5DDM4	1e-163	U5DDM4_AMBTC; Uncharacterized protein
STRING	ERN20649	1e-164	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-62	homeobox protein 22

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00070.96
Entrez Gene	18449071

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]