PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00070.96 | ||||||||
Common Name | AMTR_s00070p00154800, LOC18449071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 219aa MW: 23851.1 Da PI: 9.4342 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.1 | 1.9e-32 | 47 | 99 | 5 | 58 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 Y+eClkNhAa++Ggha DGCgEfm++ geeg+++alkCaACgCHRnFHR+e + evm_27.model.AmTr_v1.0_scaffold00070.96 47 GYRECLKNHAAAIGGHANDGCGEFMAA-GEEGSIEALKCAACGCHRNFHRKEIS 99 6*************************9.999********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.0E-29 | 47 | 98 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.2E-29 | 48 | 98 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-22 | 48 | 97 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.682 | 48 | 97 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 5.74E-19 | 140 | 210 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-30 | 141 | 211 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.6E-26 | 150 | 206 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MMDLSVVPYS HNSPGNSSTG GGPKPEKNGG VLDPLDSPLS KPSYLIGYRE CLKNHAAAIG 60 GHANDGCGEF MAAGEEGSIE ALKCAACGCH RNFHRKEISV TPLPFSSPYL HNAAPTWDKK 120 LKFPPPLTRS IDNEGFTVFG QGGGTKNGTK RYRTKFTQDQ KEKMQAFADK LGWRIQKQDD 180 VALQQFCMEV GVKRHVLKVW MHNNKNTLGK KDSLTAST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-28 | 149 | 207 | 17 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006859182.1 | 1e-165 | zinc-finger homeodomain protein 2 | ||||
Swissprot | Q9SB61 | 5e-60 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | U5DDM4 | 1e-163 | U5DDM4_AMBTC; Uncharacterized protein | ||||
STRING | ERN20649 | 1e-164 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-62 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00070.96 |
Entrez Gene | 18449071 |
Publications ? help Back to Top | |||
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