PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00070.90
Common NameAMTR_s00070p00149100
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 305aa    MW: 33782 Da    PI: 7.4432
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00070.90genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.3e-14233278655
                                              HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                      HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                              +++Er RR ri +++++L+el+P+     +k  + a++Le+A+eY+ksLq
  evm_27.model.AmTr_v1.0_scaffold00070.90 233 SIAERVRRTRISDRIQKLQELVPNM----DKQTNTADMLEEAIEYVKSLQ 278
                                              689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.034227277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-17230293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.68E-13231282No hitNo description
Gene3DG3DSA:4.10.280.102.1E-17232288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-11233278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-14233283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MLQRQSVKEE PPMSIDPSNS SFFFPSLNIE ARNRVGGDPN GPRGLTRFSS APCSFLESLV  60
EEPDVQSLEK LVQGSPRSLA AMDGILQDYA ELVHGSGPSA NVQRQNSSPA ELFTQLTGSM  120
GPGDYFSGLN PGASGKNFNN IQPDLAFSDF PLQKRIIETD GQSMGSMPRP NLPPQWKGGE  180
NQNRLLRSIS ADLEKQHQLS RSISSDLDME KVTEDTVTFR VRAKRGFATH PRSIAERVRR  240
TRISDRIQKL QELVPNMDKQ TNTADMLEEA IEYVKSLQKQ VQELSEKQLK CKCFPKASPD  300
SKTV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006859176.20.0transcription factor bHLH81
TrEMBLU5DJ640.0U5DJ64_AMBTC; Uncharacterized protein
STRINGERN206430.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09180.11e-49bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]