PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00070.121
Common NameAMTR_s00070p00188780, LOC18449096
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 402aa    MW: 43800.9 Da    PI: 5.1593
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00070.121genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.6e-104897154
                                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                       HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                              r++ +  rE+ RRdr+N+ f eL + l ++     +K++Ka+iL+ Av+ +k+L
  evm_27.model.AmTr_v1.0_scaffold00070.121 48 RKVQKADREKLRRDRLNEQFLELGSALDPD----RPKNDKATILTDAVQMLKDL 97
                                              5677889********************997....79****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1345115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-1247118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.3064797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-84897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.96E-948101No hitNo description
SMARTSM003532.6E-753103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MEPLSHSIHQ GLVPDLQPPS DGFHLLETGH PDTRYGRRVE ANDPTTARKV QKADREKLRR  60
DRLNEQFLEL GSALDPDRPK NDKATILTDA VQMLKDLTAE VNRLKAENVS LSEESDDLML  120
EKNELKDEKA TLRSDVESLR IQYQQRIAVM FPWAPMDPTV AMGPTPYPFP MPTLATPDSQ  180
RTPTQGHAQA SMTPFMPVPF HPSIQPFPFF RSVDPSGNNQ YLSLTPYAST VNVHSHVERP  240
SAQYPSPVPP LPGFVLQLQP TISVPDPRSL TPSMPVANHE TLGFQQGSIA TELSPCESAK  300
KCEDLHSSMG ADLELRTPTS SSRDSTCQSK CSRSDSQETG ENQECSIKTK KTKQSSDSSA  360
AAGSACPGKC LDDALSVNLG NSSSSESCDG SPSNKECAVQ T*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006859207.20.0transcription factor bHLH121 isoform X1
TrEMBLU5DDP10.0U5DDP1_AMBTC; Uncharacterized protein
STRINGERN206740.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP34011425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.12e-48bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]