PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00069.95
Common NameAMTR_s00069p00132820, LOC18447756
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 317aa    MW: 34875.7 Da    PI: 6.8729
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00069.95genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-192373256
                                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                             ++ GVr+++ +grWvAeI+d s   +r r +lg+f+taeeAa+a+++a+++l+ge
  evm_27.model.AmTr_v1.0_scaffold00069.95 23 RFIGVRQRP-SGRWVAEIKDSS---QRIRLWLGTFDTAEEAARAYDEAARALRGE 73
                                             578******.7*********43...36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-372386IPR001471AP2/ERF domain
CDDcd000183.43E-322382No hitNo description
Gene3DG3DSA:3.30.730.101.1E-282380IPR001471AP2/ERF domain
PfamPF008473.0E-142373IPR001471AP2/ERF domain
PROSITE profilePS5103220.3762380IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-202482IPR016177DNA-binding domain
PRINTSPR003677.2E-82435IPR001471AP2/ERF domain
PRINTSPR003677.2E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAKSQTTEQN STTTRTNRPS MRRFIGVRQR PSGRWVAEIK DSSQRIRLWL GTFDTAEEAA  60
RAYDEAARAL RGENARTNFT VSSPPNPNSS AIHDSFSVNN EFSSSWPGSL CSSLSLNSLK  120
AKLSKNLQNL IARTASSKSP KTRVSDHVTF ASLFQLKGLN QGSGNHEGSL WRSNIEKVVE  180
PSYVVPHRVA PEPLSLDPNS SCFKDPTSSF MDVEHDHSLV LEPDPKLELD SMGVSLGSSS  240
GTGDYEKFDM HDFFGYMSES SVDCDLSQEF GEKNLVNMGE SEEVNKSFCE SPRAGKRCKV  300
SSSVIIPPSF SVNRFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1523791471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006857905.10.0ethylene-responsive transcription factor WIN1
TrEMBLU5DD700.0U5DD70_AMBTC; Uncharacterized protein
STRINGERN193720.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-17related to AP2 11
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]