PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00069.91
Common NameAMTR_s00069p00130920
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family HSF
Protein Properties Length: 451aa    MW: 50334.9 Da    PI: 5.6001
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00069.91genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.92.5e-36291212103
                                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBT CS
                             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekk 71 
                                              Fl k+y+++ed+ ++ ++sws+ gn+fvv+d++ef++ +Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++  
  evm_27.model.AmTr_v1.0_scaffold00069.91  29 FLVKIYDMVEDHGVDATVSWSQGGNTFVVWDPNEFSRIILPRYFKHNNFSSFVRQLNTYGFRKVDPDR-- 96 
                                              9****************************************************************999.. PP

                                              TTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
                             HSF_DNA-bind  72 skskekiweFkhksFkkgkkellekikrkkse 103
                                                     weF +k F +g+k+ll++i+r+ks+
  evm_27.model.AmTr_v1.0_scaffold00069.91  97 -------WEFGNKFFLRGQKNLLKNIHRRKSS 121
                                              .......**********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.2E-5625118IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.6E-3826118IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.13E-3526118IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.5E-3129118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-182952IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-186779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-188092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MESKPGVKGE NQSMPHPLEA LQEPAVPPFL VKIYDMVEDH GVDATVSWSQ GGNTFVVWDP  60
NEFSRIILPR YFKHNNFSSF VRQLNTYGFR KVDPDRWEFG NKFFLRGQKN LLKNIHRRKS  120
SQVHLHPGHA YSTQLGMFGP EGKIERLRQD KNLLMLELIK LRQQQQATNV EIREMNSRLY  180
AAEQRQQQMM SFLAKAIQSP LFLDQLTKEK ERRLITSGRK KRDIPMQSPA GEGSSTIGQI  240
VKYEPDFYAS GFSRSAQDVE PDEITNLELP DDFSSDAYGN AGTDAEEGTH LGKDSTTEHM  300
YSSVAGHISG GFAYPTFTGP PSSVLCHSHH VPSKGKNVVA SDMNVNVGSV DFAGSSSSNE  360
GSVSGFNYSI EQEEKLQLAF DASDGSPSLN DKFWEKFFSP AGQEYDDTGE ETNFMALGSE  420
RAMSSKQSSI DDLISQMEQL AKDGHRAFDS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-262612117123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207220KEKERRLITSGRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020531402.10.0heat stress transcription factor A-7a-like isoform X1
RefseqXP_020531403.10.0heat stress transcription factor A-7a-like isoform X1
RefseqXP_020531404.10.0heat stress transcription factor A-7a-like isoform X1
RefseqXP_020531405.10.0heat stress transcription factor A-7a-like isoform X1
TrEMBLU5DG160.0U5DG16_AMBTC; Uncharacterized protein
STRINGERN193680.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.28e-82heat shock factor 3
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]