PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

TCP

Protein Properties

Length: 409aa MW: 43316.5 Da PI: 6.6605

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00069.147	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.5	4.2e-37	80	204	2	103
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..... 65 ag++++ +++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl qa+pai+++tgt evm_27.model.AmTr_v1.0_scaffold00069.147 80 AGRRSSGKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETITWLLHQAEPAIIAATGTgtvpa 148 8999************************************************************88888 PP TCP 66 ............ssssaseceaesssssasnsssg.....kaaksaa.kskksqks 103 +s +++ c ++sss ++ + + ++ ++ + k++k +++ evm_27.model.AmTr_v1.0_scaffold00069.147 149 iavqvggsfkipTSAPSTMCPSSSSSHIIDTTKTNpsllgHEVSAPPkKRNKLSED 204 88888777777644455555333333333322222456642222222122222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.6E-31	85	192	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.73	86	140	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008361	Biological Process	regulation of cell size
GO:0048364	Biological Process	root development
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MDSKQELEEE EDTKRNPAMA IPNHPPPQHQ HPTTTTPRER ETTTTIAYMK EEPEPGPEPE 60 TLAMVASAET ENLTVAKRSA GRRSSGKDRH TKVEGRGRRI RMPATCAARI FQLTRELGHK 120 SDGETITWLL HQAEPAIIAA TGTGTVPAIA VQVGGSFKIP TSAPSTMCPS SSSSHIIDTT 180 KTNPSLLGHE VSAPPKKRNK LSEDKSSMGH PHLEEATASI GFFAPSSLSP PATTTGIGVQ 240 GGLVPVWAVG GERLVPSAMP LNHQYHHHIW MVPVNAQAGS LATQQWGFAS PPLLSQPAMT 300 QGLVSMVGGV RPLVSASLFG GGSMVMPQFN QHPLSSDGVA SSSLESQRPP PPPLPTVDGS 360 GSSSCLEMGG GSFLEGRSEK AEHQFMGGSR SREEEEGGRH GRSENAED*

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MDSKQELEEE EDTKRNPAMA IPNHPPPQHQ HPTTTTPRER ETTTTIAYMK EEPEPGPEPE  60
TLAMVASAET ENLTVAKRSA GRRSSGKDRH TKVEGRGRRI RMPATCAARI FQLTRELGHK  120
SDGETITWLL HQAEPAIIAA TGTGTVPAIA VQVGGSFKIP TSAPSTMCPS SSSSHIIDTT  180
KTNPSLLGHE VSAPPKKRNK LSEDKSSMGH PHLEEATASI GFFAPSSLSP PATTTGIGVQ  240
GGLVPVWAVG GERLVPSAMP LNHQYHHHIW MVPVNAQAGS LATQQWGFAS PPLLSQPAMT  300
QGLVSMVGGV RPLVSASLFG GGSMVMPQFN QHPLSSDGVA SSSLESQRPP PPPLPTVDGS  360
GSSSCLEMGG GSFLEGRSEK AEHQFMGGSR SREEEEGGRH GRSENAED*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681}.
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00316	DAP	Transfer from AT2G45680	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006857957.1	0.0	transcription factor TCP9
Swissprot	A2YXQ1	4e-43	PCF2_ORYSI; Transcription factor PCF2
Swissprot	Q6ZBH6	4e-43	PCF2_ORYSJ; Transcription factor PCF2
TrEMBL	U5DA90	0.0	U5DA90_AMBTC; Uncharacterized protein
STRING	ERN19424	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3178	11	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	2e-42	TCP family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00069.147
Entrez Gene	18447809

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]