PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00069.133
Common NameAMTR_s00069p00159620, LOC18447794
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family Nin-like
Protein Properties Length: 301aa    MW: 32810 Da    PI: 8.1875
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00069.133genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK68.11.3e-211156449
                                    RWP-RK  4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49
                                              +++++d++++Fslpi++AA+ Lgvc++vLK+iCR++G+ RWP+Rk 
  evm_27.model.AmTr_v1.0_scaffold00069.133 11 SLTFDDVARFFSLPIAEAASLLGVCTSVLKKICRENGVLRWPYRKF 56
                                              699******************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.812178IPR003035RWP-RK domain
PfamPF020421.8E-201157IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGHNNGLPGG SLTFDDVARF FSLPIAEAAS LLGVCTSVLK KICRENGVLR WPYRKFQAGK  60
TVEEIKRDAA RERSKGFLDL SKSERLQDDV SVDSGKNLAL DGSSSSLISP VLGSQPYNGD  120
IISTQDIPKL QQEIPQVVQI SPQPGNKILQ NAKHHKSVLT YLDEFKYGFP SDGLSCISNK  180
WWVPDNPDGI DGPENSVVKY ALSTQNSANG LVVCSEEAQN SGPTICLAKT KRRQDLSDEE  240
LGGAVLLSSI RERNTEYGRE ALKLGFSRGY DGSKLGGRER VVLLKAFGSS LPSQWRYSFP  300
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006857943.10.0uncharacterized protein LOC18447794
TrEMBLU5DAZ80.0U5DAZ8_AMBTC; Uncharacterized protein
STRINGERN194100.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP866899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74480.17e-10RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]