PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00069.126
Common NameAMTR_s00069p00156070, LOC18447787
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C3H
Protein Properties Length: 425aa    MW: 46974.5 Da    PI: 6.9051
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00069.126genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29.4e-062747527
                                              --SGGGGTS--TTTTT-SS-SSS CS
                                   zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                                               C ++++ G C + ++CkF Hg+
  evm_27.model.AmTr_v1.0_scaffold00069.126 27 VCYYWLE-GRCTR-ENCKFLHGE 47
                                              7******.*****.*******96 PP
2zf-CCCH21.34.9e-07107127526
                                               --SGGGGTS--TTTTT-SS-SS CS
                                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                               +C ++ + G C+ Gd CkF H+
  evm_27.model.AmTr_v1.0_scaffold00069.126 107 ICTYWIA-GNCRLGDECKFLHS 127
                                               8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.2912248IPR000571Zinc finger, CCCH-type
SMARTSM003560.0032347IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-42647IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-6101127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.319102129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6103127IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5104128IPR000571Zinc finger, CCCH-type
SMARTSM003206.9E-6133172IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.103.9E-46133421IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509787.51E-46134422IPR017986WD40-repeat-containing domain
PfamPF004003.5E-4137172IPR001680WD40 repeat
PROSITE profilePS5008214.953140181IPR001680WD40 repeat
PROSITE profilePS5029421.146140424IPR017986WD40-repeat-containing domain
PROSITE patternPS006780159173IPR019775WD40 repeat, conserved site
PRINTSPR003202.7E-7159173IPR020472G-protein beta WD-40 repeat
SMARTSM0032062212249IPR001680WD40 repeat
SMARTSM003200.0021256293IPR001680WD40 repeat
PfamPF004000.0012260293IPR001680WD40 repeat
PROSITE profilePS5008212.681263302IPR001680WD40 repeat
PROSITE patternPS006780280294IPR019775WD40 repeat, conserved site
PRINTSPR003202.7E-7280294IPR020472G-protein beta WD-40 repeat
SMARTSM003208.4E-4296333IPR001680WD40 repeat
PfamPF004000.0013298332IPR001680WD40 repeat
PRINTSPR003202.7E-7320334IPR020472G-protein beta WD-40 repeat
SMARTSM003201.5337380IPR001680WD40 repeat
SMARTSM003205383420IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MDLDVVNNGG NKRMYHRAQQ NERPSKVCYY WLEGRCTREN CKFLHGELPS SNGFSQKRSL  60
QPIEERISHA TSAGPRRGMP LKWFRGQGDR QGDAAPIENR RKVQNKICTY WIAGNCRLGD  120
ECKFLHSHFV GESMTFLTML SGHEKAVRGI ALPMDSEKLF TGSQDESVRV WDCQTGQCVG  180
VINLGGEVGC MISEGPWVFV GIPNTVKAWN TKTSTDLSLE GPCGQVHTLA VGNEMLFAGI  240
QDGSILAWKF SVVGNCFEPA ASLSGHTRSV VSLVVGLKRI YSGSMDNTIK VWDLDTLQCL  300
QTLSEHSSVV MSLLCWDQFL LSCSLDRTIK VWVATGDGSL EVTYTHNEEH GVLALCGMHD  360
AQAKPVLLCS CNDNTVRLYD LPSFNERGRL FSKEEVRAIQ VGSGGLFFTG DGNGDLKIWK  420
FLTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A4e-231374238322Tako8
6g6n_A4e-231374238322Tako8
6g6n_B4e-231374238322Tako8
6g6n_C4e-231374238322Tako8
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006857936.10.0zinc finger CCCH domain-containing protein 17
RefseqXP_011628379.10.0zinc finger CCCH domain-containing protein 17
SwissprotQ9FNZ21e-180C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLU5DG490.0U5DG49_AMBTC; Uncharacterized protein
STRINGERN194030.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10651624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]