PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00069.105
Common NameAMTR_s00069p00140780
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 238aa    MW: 25513.9 Da    PI: 4.721
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00069.105genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.31.2e-154188355
                                       AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                              ++G+r  +++g+Wv+eIr+p++   + r++lg++ t+e+Aa a++aa+  l+g
  evm_27.model.AmTr_v1.0_scaffold00069.105 41 FRGIR--SRSGKWVSEIREPRK---SNRIWLGTYPTPEMAASAYDAAAYFLKG 88
                                              78995..678*********954...49*********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-264098IPR001471AP2/ERF domain
SMARTSM003805.4E-2740102IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-174098IPR016177DNA-binding domain
PROSITE profilePS5103219.7044096IPR001471AP2/ERF domain
CDDcd000181.13E-164198No hitNo description
PRINTSPR003673.2E-64152IPR001471AP2/ERF domain
PfamPF008475.0E-94288IPR001471AP2/ERF domain
PRINTSPR003673.2E-67898IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSHPFSSRQV SSSQQSNRTA IGTGSDNRQD SPRSPGRHPM FRGIRSRSGK WVSEIREPRK  60
SNRIWLGTYP TPEMAASAYD AAAYFLKGSN AVLNFPESYA SLPVPASSSH ADIQAAAAAA  120
ASLRRQTNSA ASSTGPNRDR DRDRDRDLAQ NDPIVTHGSP PSAPAPASAA EGEGPFLETE  180
NVGQIQEPEF LDEEELFDMP SLIVSMAEGM LVSPPRMDPP PENDNGDSDS GGLWSYP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1438991275Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020531457.11e-171ethylene-responsive transcription factor ERF027
TrEMBLU5DD811e-170U5DD81_AMBTC; Uncharacterized protein
STRINGERN193821e-171(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.12e-24ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]