PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00068.74
Common NameAMTR_s00068p00118480, LOC18448856
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 255aa    MW: 27839.4 Da    PI: 8.356
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00068.74genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.1e-134086248
                                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                             g+WT+eEde l+ ++   G g+W+t +++ g+ R++k+c++ w +yl
  evm_27.model.AmTr_v1.0_scaffold00068.74 40 GPWTPEEDEVLAAYIGSEGEGRWRTLPKHAGLLRCGKSCRLSWMNYL 86
                                             79*****************************99************97 PP
2Myb_DNA-binding46.58.5e-1592137148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                              rgr  ++E++l++++ ++lG++ W++Ia +++ gRt++++k++w+++l
  evm_27.model.AmTr_v1.0_scaffold00068.74  92 RGRIGADEEDLILRLYRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 137
                                              788899****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.0253486IPR017930Myb domain
SuperFamilySSF466895.86E-2536133IPR009057Homeodomain-like
SMARTSM007171.8E-83888IPR001005SANT/Myb domain
PfamPF002494.5E-114086IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-194093IPR009057Homeodomain-like
CDDcd001677.73E-84186No hitNo description
PROSITE profilePS5129421.30387141IPR017930Myb domain
SMARTSM007171.2E-1391139IPR001005SANT/Myb domain
PfamPF002493.9E-1392137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2294142IPR009057Homeodomain-like
CDDcd001677.24E-1197137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MRSPQSSVPA AAAAGRTSGR SSRGSGGPTP CCSKVGLKLG PWTPEEDEVL AAYIGSEGEG  60
RWRTLPKHAG LLRCGKSCRL SWMNYLRPCV KRGRIGADEE DLILRLYRLL GNRWSLIAGR  120
IPGRTDNEIK NYWNTHLSKK LISQGIDPRT HKPLLSSPPP DPLQIPNNKD VISPIIESSR  180
IPQNPNPSTS FPLENPLPNP NSEGLEDEDG SGNDVGLQYS CEEEFGLETT PMRAKKGVKI  240
GNPRINLGGE DEYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-22401418108B-MYB
1h8a_C1e-223714125128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006858973.10.0transcription factor MYB6
SwissprotQ388509e-73MYB5_ARATH; Transcription repressor MYB5
TrEMBLU5DDZ00.0U5DDZ0_AMBTC; Uncharacterized protein
STRINGERN204400.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.17e-71myb domain protein 5
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]