PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

MYB

Protein Properties

Length: 328aa MW: 36187.4 Da PI: 5.4202

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00068.48	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.7e-17	35	82	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEde lv ++++ G g+W+t +++ g+ R++k+c++rw +yl evm_27.model.AmTr_v1.0_scaffold00068.48 35 RGPWTPEEDEVLVAYIAREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 82 89****************************99**********97 PP
2	Myb_DNA-binding	45.5	1.7e-14	93	133	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l evm_27.model.AmTr_v1.0_scaffold00068.48 93 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNFWNTHL 133 89*************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.3E-21	26	84	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.024	30	82	IPR017930	Myb domain
SuperFamily	SSF46689	1.72E-28	32	129	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-12	34	84	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-14	35	82	IPR001005	SANT/Myb domain
CDD	cd00167	1.44E-10	37	82	No hit	No description
PROSITE profile	PS51294	22.492	83	137	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-23	85	138	IPR009057	Homeodomain-like
SMART	SM00717	2.6E-13	87	135	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-13	93	133	IPR001005	SANT/Myb domain
CDD	cd00167	2.15E-11	93	133	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010090	Biological Process	trichome morphogenesis
GO:0010468	Biological Process	regulation of gene expression
GO:0048354	Biological Process	mucilage biosynthetic process involved in seed coat development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MRPSSSVAAA TASGRSGSRG NGGVTPCCSK VGMKRGPWTP EEDEVLVAYI AREGEGRWRT 60 LPKRAGLLRC GKSCRLRWMN YLRPCVKRGH IAPDEEDLIL RLHRLLGNRW SLIAGRIPGR 120 TDNEIKNFWN THLSKKLISQ GIDPRTHKPL LPSSPPGPLQ NPNNNMKNVI PPVVRSPQIS 180 QNPKPPHAST HFSAPLSPYP PENPNPDGNC EGFLEESGSG SEVGFQYSYD DEFDHEVTTM 240 ATENVFEMGN PNSDGSGDNE YNSEDTFSSF LDSLISGDDD FLLQEQQQLM VAPEMTMNAS 300 EPQCSYWDRT LLPTPLISDH EGPSTDK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-24	35	137	4	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	2e-24	35	137	4	105	C-Myb DNA-Binding Domain
1msf_C	2e-24	35	137	4	105	C-Myb DNA-Binding Domain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006858947.1	0.0	transcription factor MYB3
TrEMBL	U5DCZ6	0.0	U5DCZ6_AMBTC; Uncharacterized protein
STRING	ERN20414	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	1e-76	myb domain protein 5

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00068.48
Entrez Gene	18448829

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]