PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00068.120 | ||||||||
Common Name | AMTR_s00068p00166340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | bHLH | ||||||||
Protein Properties | Length: 180aa MW: 20443.7 Da PI: 8.2083 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.6 | 1.9e-07 | 12 | 57 | 6 | 53 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIks 53 + +E+ RR +++ f++L l P++ +sk s + L +++eYIk+ evm_27.model.AmTr_v1.0_scaffold00068.120 12 KTIEKLRRMNMKALFSKLMALTPQQ---SSKEaISMPDRLGEVIEYIKN 57 789*********************8...56666**************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.95 | 6 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-9 | 8 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.6E-8 | 10 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MEHQGSAKPE RKTIEKLRRM NMKALFSKLM ALTPQQSSKE AISMPDRLGE VIEYIKNFEK 60 NIEVLKEERD MLKKKGVKIE EEEGVGVRKN SYLPIIKVQA LGSSVEVSIV VEVCSSDRFR 120 IHDVVLALQE EGAEIVNANF NTMDDKMIAV LHCQVSDYRV GFDTGRVYEK LRTLVQRSL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006859019.2 | 1e-129 | uncharacterized protein LOC18448902 | ||||
TrEMBL | U5D4F2 | 1e-127 | U5D4F2_AMBTC; Uncharacterized protein | ||||
STRING | ERN20486 | 1e-128 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1345 | 11 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 7e-21 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00068.120 |
Publications ? help Back to Top | |||
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