PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00067.33
Common NameAMTR_s00067p00056670, LOC18447137
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 1086aa    MW: 121314 Da    PI: 4.7251
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00067.33genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-13853248
                                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                             g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  evm_27.model.AmTr_v1.0_scaffold00067.33  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                                             78*****************************.************986 PP
2Myb_DNA-binding32.61.8e-1060103248
                                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                                WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  evm_27.model.AmTr_v1.0_scaffold00067.33  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                                              68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
PfamPF139215.6E-131070No hitNo description
CDDcd001677.34E-121053No hitNo description
SuperFamilySSF466898.63E-2133107IPR009057Homeodomain-like
CDDcd116592.74E-3055106No hitNo description
Gene3DG3DSA:1.10.10.603.6E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.44358107IPR017930Myb domain
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118311.7E-60407658IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1086 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPSDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDGRQR KRKRKGIDYN AEIPFEKKPP AGFFDVTDEE RPVEQPKFPT  240
TIEELEGKRR VDIEAQLRKQ DIAKNKIAQR QDAPSSILQV NKLNDPEAVR KRSKLMLPPP  300
QISDHELEEI AKMGYASDLA LGDEELGETS GATRALLANY GQTPRQGMTP LRTPQRTPGG  360
KVDAIMMEAE NLARLRESQT PLLGGENPDL HPSDFSGVTP KKREMQTPNP IATPMSTPGG  420
MGLTPQIGMT PSRDSYSSGM TPKQTPLRDE LHINEDMDML DDAKLERSKQ AELRKTLKSG  480
LVSLPQPKNE YQIVVQALPD ENDEAEEKIE EDMSDRIARE KAEEEARRQA LLRKRSKVLQ  540
RGLPRPPKAA VDLIKSSLSR VDEDKSSFVP TILIEQADEL VRKELLLLLE HDNAKYPLEE  600
NSEKEKKKGG KGAANGKSAA QVPLIDDFEE NELKEASALI EDEASFLRVS MGHEDASIDD  660
FAEARDACQE DLMYFPSRNS YGLASVANNN EKIAALQNEF ENVKNKMEGE TRKAVRLEQK  720
LKILTHGHQM RAGKLWSKIE VIFKQMDTAG TELECFKVLH DQEQQASRKR IRELQEAVNK  780
QKDLEKHLQH RYSNLLAKLE SIQRKMEEAR IKKRQMQEEV SVKNEEVLAL EIAPAKEGQT  840
ETMETEEPLR VSESETLIDN EDAGVAVAET VAMQTETMET EEPLRVSESK TLIDNEDTTG  900
VAVQETVAMD SESEPLGVAA TEILKDNQAP KDMPGIQVTE TIDMDSETKP LGVSGSETLT  960
DNQAPEDVAG IEVAENVAMD SKTEPPVSAS EVLGDDQFPK DMAGVEVAET ETMDCKTEPL  1020
GVSVSETLTD NARADNKVPK SMAVIEVADN ALADNEAPKG MAGIEVAETV AMDSSDQSAL  1080
SATEC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.028063802Cell division cycle 5-like protein
5xjc_L0.028063802Cell division cycle 5-like protein
5yzg_L0.028063802Cell division cycle 5-like protein
5z56_L0.028063802Cell division cycle 5-like protein
5z57_L0.028063802Cell division cycle 5-like protein
5z58_L0.028063802Cell division cycle 5-like protein
6ff4_L0.028063802Cell division cycle 5-like protein
6ff7_L0.028063802Cell division cycle 5-like protein
6icz_L0.028063802Cell division cycle 5-like protein
6id0_L0.028063802Cell division cycle 5-like protein
6id1_L0.028063802Cell division cycle 5-like protein
6qdv_O0.028063802Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGIDGRQRKRKRK
2199204RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006857301.10.0cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLU5DED60.0U5DED6_AMBTC; Uncharacterized protein
STRINGERN187680.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP39481723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]