PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00066.91 | ||||||||
Common Name | AMTR_s00066p00106190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | FAR1 | ||||||||
Protein Properties | Length: 292aa MW: 32067.8 Da PI: 6.0019 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.4 | 1.8e-26 | 96 | 183 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkk 70 ++Y +YA +vGF +r ++ +skr+g+ + r+fvCskeg+r+++ + + r+r++tr gCka+l+vkk evm_27.model.AmTr_v1.0_scaffold00066.91 96 EYYLAYALRVGFIIRSNRVLRSKRDGTNIGRDFVCSKEGFRAKKYQG---TLRPRPKTREGCKAMLRVKK 162 69*****************************************9887...99****************** PP FAR1 71 ekdgkwevtkleleHnHelap 91 e++gkw+v+k+++eH+H+l+p evm_27.model.AmTr_v1.0_scaffold00066.91 163 EDSGKWVVSKFSEEHSHALVP 183 ******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-23 | 96 | 183 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MLNSTNEGEC ASNQGGIVPE HDAAQENLAV NVDTVAEKAL YELKRHESGD QYMGFESGDA 60 PKEMAKEITP IEKAEVSDHV DPFVGMVFES EEDAKEYYLA YALRVGFIIR SNRVLRSKRD 120 GTNIGRDFVC SKEGFRAKKY QGTLRPRPKT REGCKAMLRV KKEDSGKWVV SKFSEEHSHA 180 LVPPKKVPRP RTRRQPDAIG ISNNSFNDSG IKSSNGSLLG SQPVGPTSFG PTSDIVGFVA 240 PISQQNGGIG EERLEFFDGT TVVLTSSRLD MNEPSAFHDS ETDRSFQFAA I* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020531997.1 | 1e-163 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Refseq | XP_020531998.1 | 1e-164 | protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
TrEMBL | U5DD85 | 0.0 | U5DD85_AMBTC; Uncharacterized protein | ||||
STRING | ERN20175 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8956 | 5 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-33 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00066.91 |
Publications ? help Back to Top | |||
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