PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00066.91
Common NameAMTR_s00066p00106190
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family FAR1
Protein Properties Length: 292aa    MW: 32067.8 Da    PI: 6.0019
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00066.91genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.41.8e-2696183191
                                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkk 70 
                                              ++Y +YA +vGF +r ++  +skr+g+ + r+fvCskeg+r+++ +    + r+r++tr gCka+l+vkk
  evm_27.model.AmTr_v1.0_scaffold00066.91  96 EYYLAYALRVGFIIRSNRVLRSKRDGTNIGRDFVCSKEGFRAKKYQG---TLRPRPKTREGCKAMLRVKK 162
                                              69*****************************************9887...99****************** PP

                                     FAR1  71 ekdgkwevtkleleHnHelap 91 
                                              e++gkw+v+k+++eH+H+l+p
  evm_27.model.AmTr_v1.0_scaffold00066.91 163 EDSGKWVVSKFSEEHSHALVP 183
                                              ******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2396183IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MLNSTNEGEC ASNQGGIVPE HDAAQENLAV NVDTVAEKAL YELKRHESGD QYMGFESGDA  60
PKEMAKEITP IEKAEVSDHV DPFVGMVFES EEDAKEYYLA YALRVGFIIR SNRVLRSKRD  120
GTNIGRDFVC SKEGFRAKKY QGTLRPRPKT REGCKAMLRV KKEDSGKWVV SKFSEEHSHA  180
LVPPKKVPRP RTRRQPDAIG ISNNSFNDSG IKSSNGSLLG SQPVGPTSFG PTSDIVGFVA  240
PISQQNGGIG EERLEFFDGT TVVLTSSRLD MNEPSAFHDS ETDRSFQFAA I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020531997.11e-163protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_020531998.11e-164protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBLU5DD850.0U5DD85_AMBTC; Uncharacterized protein
STRINGERN201750.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8956514
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-33FAR1 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]