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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
evm_27.model.AmTr_v1.0_scaffold00066.144 |
Common Name | AMTR_s00066p00143040, LOC18448638 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family |
HD-ZIP |
Protein Properties |
Length: 267aa MW: 30241.1 Da PI: 8.288 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm_27.model.AmTr_v1.0_scaffold00066.144 | genome | TAGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 57.4 | 2.5e-18 | 140 | 194 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q +Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k
evm_27.model.AmTr_v1.0_scaffold00066.144 140 RKKLRLSKDQSAVLEESFKEHNTLNPKQKLTLAKQLNLRPRQVEVWFQNRRARTK 194
788899***********************************************98 PP
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2 | HD-ZIP_I/II | 127.3 | 6.8e-41 | 140 | 230 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkra 69
+kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+
evm_27.model.AmTr_v1.0_scaffold00066.144 140 RKKLRLSKDQSAVLEESFKEHNTLNPKQKLTLAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRC 208
69******************************************************************* PP
HD-ZIP_I/II 70 ydalkeenerLekeveeLreelk 92
+++l+een+rL+kev eLr +lk
evm_27.model.AmTr_v1.0_scaffold00066.144 209 CENLTEENRRLQKEVMELR-SLK 230
******************9.555 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0008283 | Biological Process | cell proliferation |
GO:0009733 | Biological Process | response to auxin |
GO:0009826 | Biological Process | unidimensional cell growth |
GO:0010016 | Biological Process | shoot system morphogenesis |
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
GO:0048364 | Biological Process | root development |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0042803 | Molecular Function | protein homodimerization activity |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 267 aa
Download sequence Send
to blast |
MNREDLNLSL SLRRVGDFEL NLLPRNCRND SSSLDRSETA RSILKSFDVN RIQATSDRIP 60 TTTDAIRSEI SRIPATPNMA GFDVNRIPVI SECEEEAVVS SPMSTVSSLS MSGGKRDEPE 120 GERASSRGSS DEEDGGEAAR KKLRLSKDQS AVLEESFKEH NTLNPKQKLT LAKQLNLRPR 180 QVEVWFQNRR ARTKLKQTEV DCEFLKRCCE NLTEENRRLQ KEVMELRSLK QTPHFYMHVP 240 PAALTMCPSC ERVAVSESQF RPQIRS*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 188 | 196 | RRARTKLKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}. |