PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00065.59 | ||||||||
Common Name | AMTR_s00065p00106090, LOC18446922 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | bZIP | ||||||||
Protein Properties | Length: 150aa MW: 17501.1 Da PI: 10.4417 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 41.8 | 2.4e-13 | 42 | 94 | 5 | 57 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 kr+rrk +NR++ArrsR RK++ ++ L+ v L+ N++L+ ++ +++ + evm_27.model.AmTr_v1.0_scaffold00065.59 42 KRQRRKLSNRLSARRSRMRKQQHLDDLRHTVSRLSYGNDELARRVALASDHLS 94 9****************************************999877776655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.3E-13 | 38 | 102 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.0E-12 | 39 | 94 | No hit | No description |
PROSITE profile | PS50217 | 10.565 | 40 | 103 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 4.9E-10 | 40 | 88 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.27E-11 | 42 | 92 | No hit | No description |
CDD | cd14702 | 5.11E-17 | 43 | 94 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 45 | 60 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MLKPLQPIPK PHFSSLPLKT THVEDHPNPP QNHHPISLLD EKRQRRKLSN RLSARRSRMR 60 KQQHLDDLRH TVSRLSYGND ELARRVALAS DHLSRVIVEN ERLRLEYGVL RKRLSDYCHN 120 LVLREIEISC NGDYFTGDFH VPFAQVSMI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 54 | 61 | RRSRMRKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | U5D8N1 | 1e-104 | U5D8N1_AMBTC; Uncharacterized protein | ||||
STRING | ERN18555 | 1e-105 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8744 | 8 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04038.1 | 2e-16 | basic leucine-zipper 48 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00065.59 |
Entrez Gene | 18446922 |
Publications ? help Back to Top | |||
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