PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00065.36
Common NameAMTR_s00065p00068810
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 413aa    MW: 45147.6 Da    PI: 6.0211
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00065.36genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.4e-09234282355
                                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                               +h+ +Er RR+ri +++  L++l+P +    sk   Ka +L + ++Y++sLq
  evm_27.model.AmTr_v1.0_scaffold00065.36 234 NSHSLAERVRRERISERMKFLQDLVPGC----SKVTGKALMLDEIINYVQSLQ 282
                                              58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.59E-17229299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-10229286No hitNo description
PROSITE profilePS5088815.332231281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-16232300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-6234282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-9237287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MGTVGGDDFG FGEKNENLLD YWNPASCPNL HCDKFMKSST TSSVSLCKPA PFMDGACSSG  60
SMSCSSLTTG CDLHALEREE MGFEGSMLSP HQGTFPSQDS RFSEIASPFD PFLDTSIVQA  120
TSPTEQPSKD HHRNVGNSGV SIGRLDGKKR KRTAENPPIE SSSQFNSVQT IKEDEKRDVK  180
SSKGDDEMKS KIVQKPGANT AKPSSKQGME QPQNGDAPKE GYIHVRARRG QATNSHSLAE  240
RVRRERISER MKFLQDLVPG CSKVTGKALM LDEIINYVQS LQKQVEFLSM KLATVNPQMD  300
SNIERILSED LLSMKLAMNN LQVESDIQRI LSKDILNSQG GVPLLLDFSP GHCLSDPFVN  360
SSRQGTSHAG TAARSIENTI PGVWDDDLHS IVQMGFGTEV PFDIEPNSKI TR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147152KKRKRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020530937.10.0transcription factor bHLH62
TrEMBLU5DAU60.0U5DAU6_AMBTC; Uncharacterized protein
STRINGERN185320.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.32e-56bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]