PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00059.81
Common NameAMTR_s00059p00106830, LOC18445881
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 528aa    MW: 55384.1 Da    PI: 8.4981
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00059.81genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-0578100123
                                              EEETTTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                              ++C++C+k F r  nL+ H r H
  evm_27.model.AmTr_v1.0_scaffold00059.81  78 FVCEICNKGFQRDQNLQLHRRGH 100
                                              89*******************88 PP
2zf-C2H213.40.00024154176123
                                              EEETTTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                              +kC +C+k++  +s+ k H +t+
  evm_27.model.AmTr_v1.0_scaffold00059.81 154 FKCDKCSKRYAVQSDWKAHSKTC 176
                                              89*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-577100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.81E-777100No hitNo description
SMARTSM003550.01778100IPR015880Zinc finger, C2H2-like
PfamPF121718.5E-578100IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94978100IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SMARTSM00355280119149IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4142175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.81E-7149174No hitNo description
SMARTSM0035594154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MLVYATELAE NSSTMTVSNI TSASGEASVS SGARSQQNQN QTMVAATTKK KRNLPGMPDP  60
EAEVIALSPK TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT SKEVRKRVYI  120
CPEVSCVHHD PSRALGDLTG IKKHFCRKHG EKKFKCDKCS KRYAVQSDWK AHSKTCGTRE  180
YRCDCGTLFS RRDSFVSHRA FCDALAEESA KAQAVVAADS AVASGPANSS SDDDPKNKVA  240
STPLSTSPPN VPAPSSQQES EGSAGFMQPS LTTPASCGPT STNSSSMFAS LFASAGGLQN  300
AAFTDLIGAM TRPDPTPPPV STTTTTPAIA LALGPSSPSI SALFSQKPSS LEPNPHLHYT  360
STTPAHMSAT ALLQKAAQMG ATASSNSSFM RGLGLLPQTH QDQHHHQNQN HHHPQENWTH  420
HTGLGLGLLP PEYGVLPREE GVVSMQELMS APLFGPGGAL GSGFKGEEMG CKPTTVDFLG  480
LGSGASGPGG LSALITSIGR GLDMAAALGG VGGGAGASPG RPGWDGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-33150215368Zinc finger protein JACKDAW
5b3h_F6e-33150215368Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00403DAPTransfer from AT3G50700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006856069.10.0protein indeterminate-domain 2 isoform X1
TrEMBLU5CW600.0U5CW60_AMBTC; Uncharacterized protein
STRINGERN175360.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-112indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]