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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm_27.model.AmTr_v1.0_scaffold00059.206 |
| Common Name | AMTR_s00059p00187950 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family |
NAC |
| Protein Properties |
Length: 167aa MW: 19690.3 Da PI: 9.7783 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00059.206 | genome | TAGP | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 160.2 | 8e-50 | 13 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya 69
l+pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+++ +ekew+f+++rd+ky+
evm_27.model.AmTr_v1.0_scaffold00059.206 13 LMPGFRFHPTEEELVEFYLRRKVEGKRFSV-ELITFLDLYRYDPWELPAHAVIGEKEWFFYVPRDRKYR 80
689***************************.89***************8777899************** PP
NAM 70 tgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+g+r+nr+t+sgyWkatg d+ + + +++ +glkktLvfy+g+apkg++++W+m+eyrl
evm_27.model.AmTr_v1.0_scaffold00059.206 81 NGDRPNRVTTSGYWKATGADRMIRGErSSRPIGLKKTLVFYSGKAPKGTRSSWIMNEYRL 140
***********************99857788***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 167 aa
Download sequence Send
to blast |
MNDAEKEGGE EVLMPGFRFH PTEEELVEFY LRRKVEGKRF SVELITFLDL YRYDPWELPA 60
HAVIGEKEWF FYVPRDRKYR NGDRPNRVTT SGYWKATGAD RMIRGERSSR PIGLKKTLVF 120
YSGKAPKGTR SSWIMNEYRL PQHETTSADH NHHIFQKQKT YKLEQG*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 4e-54 | 13 | 140 | 17 | 142 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-54 | 13 | 140 | 17 | 142 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-54 | 13 | 140 | 17 | 142 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-54 | 13 | 140 | 17 | 142 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 5e-54 | 13 | 140 | 20 | 145 | NAC domain-containing protein 19 |
| 3swm_B | 5e-54 | 13 | 140 | 20 | 145 | NAC domain-containing protein 19 |
| 3swm_C | 5e-54 | 13 | 140 | 20 | 145 | NAC domain-containing protein 19 |
| 3swm_D | 5e-54 | 13 | 140 | 20 | 145 | NAC domain-containing protein 19 |
| 3swp_A | 5e-54 | 13 | 140 | 20 | 145 | NAC domain-containing protein 19 |
| 3swp_B | 5e-54 | 13 | 140 | 20 | 145 | NAC domain-containing protein 19 |
| 3swp_C | 5e-54 | 13 | 140 | 20 | 145 | NAC domain-containing protein 19 |
| 3swp_D | 5e-54 | 13 | 140 | 20 | 145 | NAC domain-containing protein 19 |
| 4dul_A | 4e-54 | 13 | 140 | 17 | 142 | NAC domain-containing protein 19 |
| 4dul_B | 4e-54 | 13 | 140 | 17 | 142 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP17 | 15 | 800 |
