PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00058.76
Common NameAMTR_s00058p00116870
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 264aa    MW: 29741.7 Da    PI: 8.1116
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00058.76genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00014154176123
                                              EEETTTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                              + C++C+++F++   L  H+r+H
  evm_27.model.AmTr_v1.0_scaffold00058.76 154 HMCTKCDQRFNSGQALGGHMRKH 176
                                              68********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.7E-8154176IPR007087Zinc finger, C2H2
PROSITE profilePS501579.806154181IPR007087Zinc finger, C2H2
PROSITE patternPS000280156176IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MKETVHHLPI LSQSQRNLRE LGFLEKQETD KEGLESDPER SEIVYESFSV YSPDQWKKKT  60
KVKREARAMK TAANSGKPHE GEIISNCDDS KKRMILIGVL AANNSEEEEV TEKDAQYSGI  120
ESEISVAFLK ESGNKKPKIS RISANFSPDR QGNHMCTKCD QRFNSGQALG GHMRKHFDRE  180
KHLAKLKAHH SSKRLTMGSQ VELGRERKNG GGERRNEERM GVMDLNGVMP IEDEDLKFAL  240
SMLEVVPVYA GYVRSGLFMI SEA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020523264.11e-157uncharacterized protein LOC18434752
TrEMBLW1PFR00.0W1PFR0_AMBTC; Uncharacterized protein
STRINGERN065490.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP706138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.18e-08C2H2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]