PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00057.241
Common NameAMTR_s00057p00204520, LOC18445308
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 488aa    MW: 53197 Da    PI: 9.0216
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00057.241genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-0580102123
                                               EEETTTTEEESSHHHHHHHHHHT CS
                                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                               + C++C+k F r  nL+ H r H
  evm_27.model.AmTr_v1.0_scaffold00057.241  80 FICEICNKGFQRDQNLQLHRRGH 102
                                               89*******************88 PP
2zf-C2H213.30.00024156178123
                                               EEETTTTEEESSHHHHHHHHHHT CS
                                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                               +kC +C+k +  +s+ k H +t+
  evm_27.model.AmTr_v1.0_scaffold00057.241 156 WKCDKCSKKYAVQSDWKAHTKTC 178
                                               58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-579102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.01E-779102No hitNo description
PROSITE profilePS5015710.84580102IPR007087Zinc finger, C2H2
SMARTSM003550.02280102IPR015880Zinc finger, C2H2-like
PfamPF121715.8E-580102IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SMARTSM00355250121151IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.8E-4144177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.01E-7151176No hitNo description
SMARTSM00355140156176IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MSNITGEGSF SSGEEINTVH EQQSVHNVSM TPVYDQSNSN GSGSQPVVTT KKKRNLPGTP  60
DPTAEVIALS PTTLMATNRF ICEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RTSTEIRKRV  120
YICPETTCVH HNPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD WKAHTKTCGT  180
KEYKCDCGTI FSRRDSFITH RAFCDALVEE NTKLNQGLAT MGATNLQGQV SELMSSMAMP  240
PSMAMSTTDS IMGTGLSDFT NQDTKNPLKP LSPHELMPMP LKTLPNIIFS TSSSGSMFSP  300
RASSMSLNMN QGAAHMSATA LLQKAAQMGA TASSNIGPPV IPRTFPGQLI TQSDQTQLLG  360
IDTGFSSFGS KKPLEMNSSQ FFDPPSEMSD MGVFSTSAGL FMGDHNQYQK GLGSENNSAS  420
NLSDNNSFLN SRNQVQGALK MGRFGRGSEI GSDRNGDRMT VDFLGVGGNM HNFHHGQSSV  480
GKPIWEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34152215366Zinc finger protein JACKDAW
5b3h_F4e-34152215366Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006855509.10.0protein indeterminate-domain 2
SwissprotQ9SCQ61e-114IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLU5CUI90.0U5CUI9_AMBTC; Uncharacterized protein
STRINGERN169760.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-102C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  4. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]