PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00057.218
Common NameAMTR_s00057p00193570, LOC18445285
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C3H
Protein Properties Length: 459aa    MW: 48842.4 Da    PI: 7.7535
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00057.218genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.54e-124873126
                                              --S---SGGGGTS--TTTTT-SS-SS CS
                                   zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                                              ++++ C+f+++tG+C+yG++C+++H+
  evm_27.model.AmTr_v1.0_scaffold00057.218 48 PGEADCMFYMKTGFCRYGANCRYNHP 73
                                              57899********************8 PP
2zf-CCCH32.71.3e-1096120327
                                               S---SGGGGTS--TTTTT-SS-SSS CS
                                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                               ++ C++f +tGtCk+G++Ck++H++
  evm_27.model.AmTr_v1.0_scaffold00057.218  96 QPTCQYFIKTGTCKFGATCKYHHPR 120
                                               689********************96 PP
3zf-CCCH34.53.3e-11143166427
                                               ---SGGGGTS--TTTTT-SS-SSS CS
                                   zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                                               ++C+++ +tG+Ck+G++CkF+H++
  evm_27.model.AmTr_v1.0_scaffold00057.218 143 KECSYYVKTGQCKFGPTCKFHHPQ 166
                                               68********************97 PP
4zf-CCCH39.87.6e-13294320127
                                               --S---SGGGGTS--TTTTT-SS-SSS CS
                                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                               +++++C+f++rtG CkyG++C+++H+p
  evm_27.model.AmTr_v1.0_scaffold00057.218 294 PGQPECQFYMRTGDCKYGSTCRYHHPP 320
                                               5789*********************97 PP
5zf-CCCH33.19.6e-11343365426
                                               ---SGGGGTS--TTTTT-SS-SS CS
                                   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                               + C+f+a+ G Ck+G++CkF H+
  evm_27.model.AmTr_v1.0_scaffold00057.218 343 PTCSFYAQHGVCKFGPTCKFDHP 365
                                               78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-74774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.0374775IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-94973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-65175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-55373IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-493120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.09893121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-596120IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-796120IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315139167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6142166IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-9143166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4145165IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6293320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.032293321IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-10295320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6297322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4299319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.173339367IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-6339366IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-8343365IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5343369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-4345364IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MEYYGKNPTL EGSSIDPSPE WNEVGLEESM WRLSLGRESG GEYYPERPGE ADCMFYMKTG  60
FCRYGANCRY NHPHDRNPAA DVLQTGGGEY PERVGQPTCQ YFIKTGTCKF GATCKYHHPR  120
YGGGLMSPVG LNILGYPLRP GDKECSYYVK TGQCKFGPTC KFHHPQPVNT SLQTTPAPQF  180
YPTVHSPSQP SPQQYGGGMA SWQVARSPFL PGSYVQGPYS PVILHPGVVP LPGWSAYPPP  240
VTPVASPGAQ QPVGTGSLYG LSPTATPYPG FFSPVSSSVA GPSGTKENTF PERPGQPECQ  300
FYMRTGDCKY GSTCRYHHPP DRIVPQTNCT LSPIGFPLRP GAPTCSFYAQ HGVCKFGPTC  360
KFDHPLGSLS YSPSASSLAD MPVAPYPVGS SLATLAPSSS STDLSGAQKS SENPSSSSMG  420
SSPLKGTQSL QTQTSAQSST PSSSSSTTGH GTENPSSI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006855486.10.0zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W911e-160C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLU5D9780.0U5D978_AMBTC; Uncharacterized protein
STRINGERN169530.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP28651131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-147C3H family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]