PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00057.212
Common NameAMTR_s00057p00191330
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 494aa    MW: 53519.3 Da    PI: 6.113
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00057.212genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.8e-1860109255
                                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                               ++ GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  evm_27.model.AmTr_v1.0_scaffold00057.212  60 KFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAALSIKG 109
                                               688******.**********965...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.40460117IPR001471AP2/ERF domain
CDDcd000183.11E-3060119No hitNo description
Gene3DG3DSA:3.30.730.101.6E-2860117IPR001471AP2/ERF domain
SMARTSM003807.5E-3660123IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2060118IPR016177DNA-binding domain
PRINTSPR003679.2E-86172IPR001471AP2/ERF domain
PfamPF008474.2E-1162109IPR001471AP2/ERF domain
PRINTSPR003679.2E-88399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MDEHATGSFK ITQELNPSPP SSSSLLTDFT WRPNNTIINN NNNNRKRSPT EPGSNTSSNK  60
FLGVRRRPWG RYAAEIRDPS TKERHWLGTF DTAEEAALAY DRAALSIKGS DARTNFNYHS  120
PPLHVPAIPQ PHPLSLSAID TSAEPMPCQH LLAQLGHASQ YPLQLLNLSN TLAQSDLTTS  180
APAGIRPTNP SNPHQLLFPQ SGRAMSAGTT HSRMSPHQQS IMVGSTTCGE SLIESGHWEG  240
PIQGGTHLSS HTQWDSAKWS QGLLASEYSG FASLVGNKED SGYLGSIVHD GFSSKPTSFS  300
HENINFSEKS AIFSHQRSNS SQGPITFSNE RSDPSKKPTT FSPENTDFFE KSTKFSHESS  360
TFSEKTTTSS HERRRPSISS HEKSKPNFLN RETNQSSGAV GVHCVASANV GECSSEHGAW  420
NGTSTDGFSF NGGFDDYDED GSGVMGIGEH GSSSLWGIEE EEYNALLFGC MPQVSDTLCQ  480
SLSDVFDLGS SQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1861116359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLU5D6970.0U5D697_AMBTC; Uncharacterized protein
STRINGERN169470.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.11e-22ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]