PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00057.100
Common NameAMTR_s00057p00122250, LOC18445163
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 302aa    MW: 33433.7 Da    PI: 8.463
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00057.100genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33.1e-07244287445
                                               S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
                           Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                                               W+  Ed  l++a k ++++   +W+++a+ ++ g++  +c  r+ 
  evm_27.model.AmTr_v1.0_scaffold00057.100 244 WSSGEDIALLNALKAFPKEtpmRWEKVAASVP-GKSKASCMKRLA 287
                                               ********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.519151192IPR017877Myb-like domain
SMARTSM007170.016155208IPR001005SANT/Myb domain
SuperFamilySSF466894.6E-5156195IPR009057Homeodomain-like
PROSITE profilePS500907.004236290IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-5236293IPR009057Homeodomain-like
SMARTSM007177.1E-4240292IPR001005SANT/Myb domain
SuperFamilySSF466894.29E-9241288IPR009057Homeodomain-like
CDDcd001679.65E-5244285No hitNo description
PfamPF002494.8E-6244286IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEYIDEESKP RFQLQSQNSS PQSQPTHRIN KTHAAICISI GILLFSYSIL LQNGASQLVM  60
VWIAFSLVVG PFAPISVTGG DIRVGVGELL EEEPDHQEVV ESKRKPATIR AKSRRSEPAA  120
ADFQSFSSSS NGNQEKMTNV SEKLGDNGDQ KENQCEKEWN DSDLDLLRKQ MAKHPPGKPG  180
RWDLIAQAFN GKHGLESIIK MAKSLSEKKP GGSDSYAQFL KQRKPLDDRV SDTERKEESE  240
NAVWSSGEDI ALLNALKAFP KETPMRWEKV AASVPGKSKA SCMKRLAELR KDFRSSKASD  300
T*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006855368.10.0dnaJ homolog subfamily C member 2
SwissprotQ9ASQ28e-64MAMYB_ARATH; Transcription factor MAMYB
TrEMBLU5D3L30.0U5D3L3_AMBTC; Uncharacterized protein
STRINGERN168350.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP81421212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.13e-65MYB_related family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]