PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

ERF

Protein Properties

Length: 188aa MW: 21450 Da PI: 9.4844

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00051.83	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.3	2.8e-16	52	101	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r + +g+WvAeIr+p++ r r++lg++ t+ Aa a++ a +l+g evm_27.model.AmTr_v1.0_scaffold00051.83 52 QYRGIRMRT-WGKWVAEIREPKK---RSRIWLGSYSTPIAAAMAYDTAVFYLRG 101 69**998.******965...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	2.3E-28	51	110	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.35E-19	52	109	IPR016177	DNA-binding domain
CDD	cd00018	1.60E-24	52	110	No hit	No description
Pfam	PF00847	2.0E-9	52	101	IPR001471	AP2/ERF domain
SMART	SM00380	2.4E-34	52	115	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.377	52	109	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-10	53	64	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-10	91	111	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0009414	Biological Process	response to water deprivation
GO:0042538	Biological Process	hyperosmotic salinity response
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0001078	Molecular Function	transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MDEENSCSAS ASASVWKESE SMMELQQQKH KGKKRSSSLG KEAVKNESER RQYRGIRMRT 60 WGKWVAEIRE PKKRSRIWLG SYSTPIAAAM AYDTAVFYLR GPSAQRNFPE FATEEDCLSD 120 MSADSIRKKA TEVGARVDAL QQNRTHISRR PNLNQEPPPE SEDWFASCAS SSERSQRLRI 180 KELREDI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	4e-15	51	109	4	63	ATERF1
3gcc_A	4e-15	51	109	4	63	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00188	DAP	Transfer from AT1G46768	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006855217.1	1e-136	ethylene-responsive transcription factor RAP2-1
Swissprot	Q8LC30	4e-43	RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBL	U5D2N2	1e-135	U5D2N2_AMBTC; Uncharacterized protein
STRING	ERN16684	1e-136	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46768.1	4e-45	related to AP2 1

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00051.83
Entrez Gene	18445009

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]