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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm_27.model.AmTr_v1.0_scaffold00051.5 |
| Common Name | AMTR_s00051p00020930, LOC18444963 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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| Family |
WOX |
| Protein Properties |
Length: 223aa MW: 24867 Da PI: 9.5815 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm_27.model.AmTr_v1.0_scaffold00051.5 | genome | TAGP | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 68 | 1.2e-21 | 87 | 146 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
+R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++
evm_27.model.AmTr_v1.0_scaffold00051.5 87 TRWNPTQEQIAILEMLYRGgMRTPNAQQIEHITAQLgrygKIEGKNVFYWFQNHKARERQ 146
8*****************99**************************************97 PP
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| 2 | Wus_type_Homeobox | 118.6 | 2.7e-38 | 86 | 148 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
+tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqkq
evm_27.model.AmTr_v1.0_scaffold00051.5 86 STRWNPTQEQIAILEMLYRGGMRTPNAQQIEHITAQLGRYGKIEGKNVFYWFQNHKARERQKQ 148
79***********************************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 223 aa
Download sequence Send
to blast |
MATAWEAMNV QQAAETRWEH EASTVRCKRL RPLTLSLSTP AATPSSESNS GIATPTFIRC 60
PPRKAAEAAQ QQQATAEAMP QAQVGSTRWN PTQEQIAILE MLYRGGMRTP NAQQIEHITA 120
QLGRYGKIEG KNVFYWFQNH KARERQKQKR TSGALTLGLT TTTTIAAASS TAKGEGEGCF 180
FKRKCRSWAL QSLDLEEEER SRFQADKTLE LFPLHPEAKE ER*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FM882144 | 4e-69 | FM882144.1 Amborella trichopoda partial wox4 gene for putative wuschel homeobox protein WOX4. |
| Publications
? help Back to Top |
- Amborella Genome Project
The Amborella genome and the evolution of flowering plants.
Science, 2013. 342(6165): p. 1241089
[PMID:24357323] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Dolzblasz A, et al.
Stem Cell Regulation by Arabidopsis WOX Genes.
Mol Plant, 2016. 9(7): p. 1028-39
[PMID:27109605] - Guo X, et al.
Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
PLoS Pathog., 2017. 13(2): p. e1006142
[PMID:28158306] - Denis E, et al.
WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
Plant J., 2017. 90(3): p. 560-572
[PMID:28218997] - Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
New Phytol., 2017. 215(2): p. 642-657
[PMID:28609015] - Yamaguchi YL, et al.
Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
Front Plant Sci, 2017. 8: p. 1195
[PMID:28747918]
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