PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00051.16
Common NameAMTR_s00051p00042220
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 338aa    MW: 38313.1 Da    PI: 6.7021
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00051.16genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-0599122123
                                              EEETTTTEEESSHHHHHHHHHH.T CS
                                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                              y C+ Cg+ ++++ +Lk+H ++ H
  evm_27.model.AmTr_v1.0_scaffold00051.16  99 YICGVCGRKCTTNIDLKKHFKNlH 122
                                              89*****************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10103.3E-71889IPR029060PIN domain-like
SuperFamilySSF576676.86E-594126No hitNo description
PROSITE profilePS5015710.9799127IPR007087Zinc finger, C2H2
PROSITE patternPS000280101122IPR007087Zinc finger, C2H2
CDDcd061672.42E-13118252No hitNo description
Gene3DG3DSA:3.40.50.10103.3E-7184248IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEIETEMFKN KDGVYTANHH HKVAVLWDLD NKPPTGPPYD AALALHNAAS RFGDICHFAA  60
FANRHAFSHL PNWVLEKRRE RKQLDILERK GLSSSESPYI CGVCGRKCTT NIDLKKHFKN  120
LHQREREKKL GRMRSLKGKK RQKYRERFIS GNLKYDEAAK ELLTPKAGYG LASELRRAGV  180
YVRTVEDKPQ AADAALKRQM QHCMGNGVDC VLLVSDDSDF SEMLRRARSI DLQTVVVGDG  240
GALRRHADVW MSWRHLQSEL CGFDGEGSMH NLDFEESDYE SESDGLDGVE VLRSGFSVSV  300
SGFSGMDVEF DERNGFRILG RSVEDLGWES DEEMDFF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006855150.20.0uncharacterized protein LOC18444932
TrEMBLU5D5C20.0U5D5C2_AMBTC; Uncharacterized protein
STRINGERN166170.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP30481420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-112C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]