PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00049.51
Common NameAMTR_s00049p00081480, LOC18441867
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ARR-B
Protein Properties Length: 599aa    MW: 67923.8 Da    PI: 5.0259
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00049.51genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.32.7e-26194247155
                                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                              kpr++Wt +LHe+Fv+av+q+ G++k  Pk+il+lm+v+gLt+e+v+SHLQkYRl
  evm_27.model.AmTr_v1.0_scaffold00049.51 194 KPRVNWTVDLHEQFVDAVHQI-GIDKVGPKKILDLMHVPGLTRENVASHLQKYRL 247
                                              79*******************.********************************8 PP
2Response_reg75.42.2e-25161241109
                                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHH CS
                             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeiree 68 
                                              vl+vdD+ + +++l+++l+k  y +v+++  +e+al++l+e++  +D+++ D++mp+mdG++ll+     
  evm_27.model.AmTr_v1.0_scaffold00049.51  16 VLVVDDDLTWLKILEKMLKKCLY-KVTTCNLAEDALKMLRERKdgFDIVISDVNMPDMDGFKLLELVGL- 83 
                                              89*********************.***************999999*******************87754. PP

                                              TTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                             Response_reg  69 epklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                                              e++lp+++++  +e++ + + +k Ga d+l Kp+ ++el++
  evm_27.model.AmTr_v1.0_scaffold00049.51  84 EMDLPVLMMSVDDEKSRVMKGVKHGACDYLLKPVRMKELRN 124
                                              558***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.4E-1431584IPR017053Response regulator B-type, plant
SuperFamilySSF521721.99E-3312140IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.8E-4213145No hitNo description
SMARTSM004481.6E-2914126IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.74315130IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.9E-2216125IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.74E-2817129No hitNo description
PROSITE profilePS512949.958191250IPR017930Myb domain
SuperFamilySSF466892.78E-18192251IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-28193252IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-22194247IPR006447Myb domain, plants
PfamPF002492.9E-7196246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MESVLPSSQF PNGLRVLVVD DDLTWLKILE KMLKKCLYKV TTCNLAEDAL KMLRERKDGF  60
DIVISDVNMP DMDGFKLLEL VGLEMDLPVL MMSVDDEKSR VMKGVKHGAC DYLLKPVRMK  120
ELRNIWQHVY RKKLLETKDM DFNEDFQRLR KGSDDSDEGS LFYGGDLKLS KKRKDAKDED  180
GDDKDTNDPA SVKKPRVNWT VDLHEQFVDA VHQIGIDKVG PKKILDLMHV PGLTRENVAS  240
HLQKYRLYLA RLQRQPEGTM PPNSNSREPP ESQGSNSTFS GSSDETILPQ NALSEIHDEF  300
TSLHKTVTKR ALALSKLDLL DVQKQDPVCH EGLQFISFGN TVYCEDYTSS TFPWQQHANE  360
ELPTLQIKQQ HANEKIPAMH INQQSCVGDC TNLEVPFQQP DIQIQLNHPL SSGHPYSSDF  420
IERTRMTNKG TFDLLNQTKQ PITDCKLDHV SPLGSSADSM ITFCLERNYP STKTYELESY  480
WDFPHININL QGGSTVASSM ASQFEELHLR SVQSHGHVKD FVPNGMEMIH LNDSISAAEI  540
PSFFYEETSI SSDDLFNLMD DSLLTEGMSN LSHQLISSSI SSPMLRDTWS TPINWVEM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-17194249156Transcription factor LUX
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006852154.10.0two-component response regulator ORR21 isoform X1
RefseqXP_020527763.10.0two-component response regulator ORR21 isoform X1
TrEMBLW1PZU70.0W1PZU7_AMBTC; Two-component response regulator
STRINGERN136210.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.19e-95response regulator 11
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]