PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00048.53
Common NameAMTR_s00048p00108400
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 389aa    MW: 41001.4 Da    PI: 8.6135
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00048.53genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.41.1e-21312374163
                                              XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                   bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                              e+elkr+rrkq+NRe+ArrsR RK+ae+eeL+++v+ L++eN+aLk el + ++ev++l +++
  evm_27.model.AmTr_v1.0_scaffold00048.53 312 ERELKRQRRKQSNRESARRSRMRKQAECEELAQRVDLLKEENTALKAELGRVRQEVEQLATQN 374
                                              89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.4E-34199IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.2E-52138276No hitNo description
Gene3DG3DSA:1.20.5.1702.0E-19305373No hitNo description
PfamPF001701.5E-19312374IPR004827Basic-leucine zipper domain
SMARTSM003389.5E-23312376IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.461314377IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-12315371No hitNo description
CDDcd147023.21E-24317366No hitNo description
PROSITE patternPS000360319334IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MGNGEVDTSA KPKTSAPQEQ PPASTATVYP DWSAIQAFYN PGTPPIPPPG FFHSSVASSP  60
QAHPYMWGPQ HIIPPYGTPP HPYVAMYPHG GLYAHPSMPP GSHPFSPYAI PSPNGNPEAS  120
GSAPAGVEGD RKSSEGKERS PLNRSKGSLG SLNMLTGKND LGKTSGASAN GAYSQSGESG  180
SEGSSEGSDA NSQNGSQQKA HCGQGSLESE ASQNGSNRAA VQNGIPRTPP QAMMNHQTMA  240
IMAMQPTAAP GGVTGPTTNL NIGMDYWGGP AASAVPALHG KIPTTPVAGA VVPSGLVGSR  300
DGVPSELWLQ DERELKRQRR KQSNRESARR SRMRKQAECE ELAQRVDLLK EENTALKAEL  360
GRVRQEVEQL ATQNASLKWI TYHLNFSR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328335RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011626915.10.0bZIP transcription factor 16 isoform X1
RefseqXP_011626916.10.0bZIP transcription factor 16 isoform X1
SwissprotQ501B21e-137BZP16_ARATH; bZIP transcription factor 16
TrEMBLU5CZF70.0U5CZF7_AMBTC; Uncharacterized protein
STRINGERN155340.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7001767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-123basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]