PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00048.34
Common NameAMTR_s00048p00075850
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family HSF
Protein Properties Length: 508aa    MW: 56245.5 Da    PI: 4.6225
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00048.34genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.91e-35141062103
                                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBT CS
                             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekk 71 
                                              Fl+k+y++++d+++++++sws  +nsf+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++  
  evm_27.model.AmTr_v1.0_scaffold00048.34  14 FLSKTYDMVDDPATDSIVSWSPGNNSFIVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR-- 81 
                                              9*********************99*****************************************999.. PP

                                              TTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
                             HSF_DNA-bind  72 skskekiweFkhksFkkgkkellekikrkkse 103
                                                     weF+++ F +g+++ll++i r+k +
  evm_27.model.AmTr_v1.0_scaffold00048.34  82 -------WEFANEGFLRGQRHLLKNIYRRKPS 106
                                              .......*********************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.2E-40698IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.04E-369103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.4E-6510103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MDGLHANANA PPPFLSKTYD MVDDPATDSI VSWSPGNNSF IVWNPPEFAR DLLPKYFKHN  60
NFSSFVRQLN TYGFRKVDPD RWEFANEGFL RGQRHLLKNI YRRKPSHSHT QPQQSQGQSA  120
SVNACVEVGK FGIEEEIERL KRDKNVLMQE LVRLRQQQQS TDHQLQTMSQ RLQGMEQRQQ  180
QMMSFLAKAM QSPGFLAQLM QQNENNRRIA GNKKRRLPKQ EENTEVEGPS LEGQIVKYQP  240
LINEAAKALI MQIFNVDQTP KREPNPKNSD NLFTDAVRAT SDALDSGSSS NRTSSVTLTE  300
MQPSSAPSYT TNSSSFAGLC PSAATSELQT SSSMSDMVTM PQLPDMDVLS TLTDSVTPCE  360
SGLALPEFSH VQGLVPESNS MALPSGTYVV PGTGGEFIEP MSVAMDTTNP LDSEKFSSEN  420
DTDSLFDGLP FLPGENDDWE KFLSASPLSG VSGDNEEVES STLEGVTKGN DIKPKDPSNE  480
WNKAQRMDHL TEQMGLLTSD ANSCCFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-281210818125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293474e-31AK229347.1 Arabidopsis thaliana mRNA for heat shock transcription factor HSF1, partial cds, clone: RAFL16-59-L13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006854048.20.0heat stress transcription factor A-1 isoform X1
SwissprotQ84T611e-178HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLU5CZX60.0U5CZX6_AMBTC; Uncharacterized protein
STRINGERN155150.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-113heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]