|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
evm_27.model.AmTr_v1.0_scaffold00048.116 |
Common Name | AMTR_s00048p00162580, LOC18443887 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
|
Family |
HD-ZIP |
Protein Properties |
Length: 255aa MW: 28831.6 Da PI: 9.0412 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm_27.model.AmTr_v1.0_scaffold00048.116 | genome | TAGP | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 54.3 | 2.3e-17 | 113 | 167 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k
evm_27.model.AmTr_v1.0_scaffold00048.116 113 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKRLKLRPRQVEVWFQNRRARTK 167
778899***********************************************98 PP
|
2 | HD-ZIP_I/II | 126 | 1.6e-40 | 113 | 202 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkra 69
+kk+rlskeq++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+
evm_27.model.AmTr_v1.0_scaffold00048.116 113 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKRLKLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRC 181
69******************************************************************* PP
HD-ZIP_I/II 70 ydalkeenerLekeveeLreel 91
+++l+een+rL+ e +eLr +l
evm_27.model.AmTr_v1.0_scaffold00048.116 182 CETLTEENRRLHMELQELR-AL 202
******************9.55 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 255 aa
Download sequence Send
to blast |
MDLALSIGDS TAYAKEITER SWISGLEMTR NFQGKETHSR TLPVQLDLLP LAPFPRSSRP 60 QNTNPIDHGQ IDMNQTPPTS STDYSRAPMS ETEGDRVSCD EGESTGGGEG STRKKLRLSK 120 EQSAYLEESF KEHNTLNPKQ KLALAKRLKL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR 180 CCETLTEENR RLHMELQELR ALKRFSVEKP LHLVFPAASL TVCPSCERFS SPDNGRKTTG 240 KRFLPFAQDT SAAS*
|
Nucleic Localization
Signal ? help
Back to Top |
|
No. |
Start |
End |
Sequence |
1 | 111 | 117 | TRKKLRL |
2 | 161 | 169 | RRARTKLKQ |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |