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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
evm_27.model.AmTr_v1.0_scaffold00047.121 |
Common Name | AGL2, AMTR_s00047p00190220 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family |
MIKC_MADS |
Protein Properties |
Length: 244aa MW: 27832.8 Da PI: 9.1823 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm_27.model.AmTr_v1.0_scaffold00047.121 | genome | TAGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 99.8 | 1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
evm_27.model.AmTr_v1.0_scaffold00047.121 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
79***********************************************96 PP
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2 | K-box | 104.6 | 1.2e-34 | 81 | 172 | 8 | 99 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleq 76
++ +++++s++qe+ kLk+++e+Lqr+qR+llGedL++Ls keL+qLeqqLe slk+iRs+K++ +++q
evm_27.model.AmTr_v1.0_scaffold00047.121 81 NVPTRETQSSYQEYLKLKARVESLQRSQRNLLGEDLGPLSSKELEQLEQQLEMSLKQIRSTKTQCMFDQ 149
4678899************************************************************** PP
K-box 77 ieelqkkekelqeenkaLrkkle 99
+ +l+++e +lqe+nkaL++kle
evm_27.model.AmTr_v1.0_scaffold00047.121 150 LADLRRRELALQETNKALKRKLE 172
********************986 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.529 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.10E-46 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 4.84E-34 | 2 | 85 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.0E-29 | 84 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.913 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009611 | Biological Process | response to wounding |
GO:0048481 | Biological Process | plant ovule development |
GO:0071486 | Biological Process | cellular response to high light intensity |
GO:0071492 | Biological Process | cellular response to UV-A |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 244 aa
Download sequence Send
to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST 60 SSMVKTLERY QKCNYGALET NVPTRETQSS YQEYLKLKAR VESLQRSQRN LLGEDLGPLS 120 SKELEQLEQQ LEMSLKQIRS TKTQCMFDQL ADLRRRELAL QETNKALKRK LEGASASNPP 180 QLAWENNGQN IHYNRQPAHT EGFFHPLECD STLQIGYHPS CPDQMPVAAP VQNVNAFLPG 240 WLV*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4ox0_A | 7e-33 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 7e-33 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 7e-33 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 7e-33 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Orthologous Group
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Publications
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- Zahn LM, et al.
The evolution of the SEPALLATA subfamily of MADS-box genes: a preangiosperm origin with multiple duplications throughout angiosperm history. Genetics, 2005. 169(4): p. 2209-23 [PMID:15687268] - Jaillon O, et al.
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] - Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] - Amborella Genome Project
The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] - Grimplet J,Martínez-Zapater JM,Carmona MJ
Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]
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