PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00045.155
Common NameAMTR_s00045p00146180, LOC18430178
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 439aa    MW: 49461.3 Da    PI: 7.3963
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00045.155genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-171461148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                              +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
  evm_27.model.AmTr_v1.0_scaffold00045.155 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61
                                              678*******************************************97 PP
2Myb_DNA-binding42.12e-1367110146
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                               rg ++++E+  ++++++ lG++ W+ Ia+ ++ gRt++++k+ w++
  evm_27.model.AmTr_v1.0_scaffold00045.155  67 RGTFSQQEENMIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110
                                               899*******************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-28664IPR009057Homeodomain-like
PROSITE profilePS5129425.116965IPR017930Myb domain
SuperFamilySSF466893.44E-2912108IPR009057Homeodomain-like
SMARTSM007172.7E-131363IPR001005SANT/Myb domain
PfamPF002493.3E-151461IPR001005SANT/Myb domain
CDDcd001671.57E-111761No hitNo description
Gene3DG3DSA:1.10.10.606.2E-2565116IPR009057Homeodomain-like
SMARTSM007174.8E-1266114IPR001005SANT/Myb domain
PROSITE profilePS5129419.43766116IPR017930Myb domain
PfamPF002492.4E-1267110IPR001005SANT/Myb domain
CDDcd001672.56E-869109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQQEENMIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQRG  120
IDPTTHKPLS EVENGEEKTQ NQNEKASGSN ELKLLAPSSI PETEVKPNLK PPLMTNPVED  180
LTPKLKTTST NTGPTNSLSK EFFLERFINS HESSSCRGSS DCSPYFPLNP VNYGSNCTNQ  240
ANPMNLSINP TPNPWFNQNC RPLTDISPVT SSLMDSPACK RTPIIQPSPN FKPSINQEFM  300
ADKYWEAGRN CNNSSNSGSS SSIEFQSTNT TSLFENSVFS WGSADGRVDS LDISSEKNAP  360
IRLEGETEDV KWCDYLHLPL VHQISGVIQN QNQPLYSEIK SEDQFSLSSW HQDQSQQLQS  420
NDIFAKEFQR IAAAFEQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006840401.10.0transcription factor MYB86
TrEMBLW1P3B70.0W1P3B7_AMBTC; Uncharacterized protein
STRINGERN020760.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-91myb domain protein 61
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]