PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00045.153 | ||||||||
Common Name | AMTR_s00045p00145150, LOC18430176 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | bZIP | ||||||||
Protein Properties | Length: 157aa MW: 17777.2 Da PI: 10.0375 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 38 | 3.7e-12 | 74 | 132 | 2 | 60 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 +e +r +r+ +NR++A+ R+RKk ++ eLe k+ eL+ N +L +++++l +e l+ evm_27.model.AmTr_v1.0_scaffold00045.153 74 REYRRLKRLLRNRVSAQQARERKKVYMTELESKAIELQDMNAKLEEKISTLINENTMLR 132 7899***********************************************99988665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.880.10 | 1.2E-4 | 34 | 91 | IPR008917 | Transcription factor, Skn-1-like, DNA-binding domain |
SMART | SM00338 | 5.9E-11 | 73 | 137 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.7E-11 | 74 | 133 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.381 | 75 | 138 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.44E-12 | 76 | 135 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 80 | 95 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14704 | 4.28E-11 | 87 | 128 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.4E-16 | 92 | 137 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010224 | Biological Process | response to UV-B | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MPLPDSQMAQ GNNQSSSLVA SLPLSTKSKV EESDEDIFTV PDMEAPANES GVAKVEVQQN 60 KISQRKRSRN PADREYRRLK RLLRNRVSAQ QARERKKVYM TELESKAIEL QDMNAKLEEK 120 ISTLINENTM LRKVIMNTRP KVDENVEPLK NQAGHS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in light. Acts downstream of the light receptor network and directly affects transcription of light-induced genes. Specifically involved in the blue light specific pathway, suggesting that it participates in transmission of cryptochromes (CRY1 and CRY2) signals to downstream responses. In darkness, its degradation prevents the activation of light-induced genes. {ECO:0000269|PubMed:12023303}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006840399.1 | 1e-109 | transcription factor HY5-like isoform X2 | ||||
Swissprot | Q8W191 | 7e-44 | HYH_ARATH; Transcription factor HY5-like | ||||
TrEMBL | W1P350 | 1e-108 | W1P350_AMBTC; Uncharacterized protein | ||||
STRING | ERN02074 | 1e-109 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2081 | 17 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17609.2 | 3e-46 | HY5-homolog |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00045.153 |
Entrez Gene | 18430176 |