PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00044.81 | ||||||||
Common Name | AMTR_s00044p00109210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MYB_related | ||||||||
Protein Properties | Length: 141aa MW: 15912.9 Da PI: 6.0051 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.7 | 4.1e-11 | 18 | 62 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT+ E +l+ +a +++ ++ +W++Ia +++ g+t+ q+k ++ + evm_27.model.AmTr_v1.0_scaffold00044.81 18 WTPHENKLFENALAEFDSDtpdRWEKIAYRLP-GKTPFQIKKHYES 62 ********************************.***********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.5E-10 | 14 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-7 | 17 | 64 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.18E-13 | 17 | 70 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.7E-9 | 17 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.30E-9 | 18 | 64 | No hit | No description |
PROSITE profile | PS50090 | 7.282 | 18 | 64 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MCDPLMRWAT SSSSFTDWTP HENKLFENAL AEFDSDTPDR WEKIAYRLPG KTPFQIKKHY 60 ESLVEDVNFI DMGLVPIPSY AHHGLCDDFL VEVSEFQVVP GGGRGGRGGD PERKKGVPWT 120 EDEHSLCSPT NPRKQYKKGK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-21 | 9 | 84 | 2 | 77 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011627517.1 | 2e-90 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 2e-26 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | U5D6S9 | 1e-101 | U5D6S9_AMBTC; Uncharacterized protein | ||||
STRING | ERN17112 | 1e-102 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 9e-27 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00044.81 |
Publications ? help Back to Top | |||
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