PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

NAC

Protein Properties

Length: 810aa MW: 92189.7 Da PI: 6.0082

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00044.30	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.7	1.6e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkky 68 lppGfrFhPtdeelv +yLk+k++g k++l e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky evm_27.model.AmTr_v1.0_scaffold00044.30 6 LPPGFRFHPTDEELVAYYLKRKIHGWKIDL-EIIPEVDLYKCEPWDLPdKsFLPSKDLEWYFFSPRDRKY 74 79**************************.99**********96434555777******** PP NAM 69 atgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++g+r+nrat++gyWkatgkd+++ s +++ vg+kktLv+y+grap+g +t+Wvmheyrl evm_27.model.AmTr_v1.0_scaffold00044.30 75 PNGSRTNRATQAGYWKATGKDRKINS-QKRSVGMKKTLVYYRGRAPHGLRTNWVMHEYRL 133 **********************.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-64	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.061	6	156	IPR003441	NAC domain
Pfam	PF02365	3.1E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 810 aa Download sequence Send to blast
MAPVTLPPGF RFHPTDEELV AYYLKRKIHG WKIDLEIIPE VDLYKCEPWD LPDKSFLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATQAGYWK ATGKDRKINS QKRSVGMKKT LVYYRGRAPH 120 GLRTNWVMHE YRLDEKECVA VSGLQDAYAL CRIFKKSGTI PKIGEQYGGG AQNQNQWVQN 180 DYASGMELSE GKGDDYDNND YRFPSDNSSS EIIQCAQVDR ATRDGRWTQF LSDEVVSSMC 240 QFPNSMNSSF VPSKAEVAME CALLQNRLSW PPMEIEEFPQ VGTSNTMFLE PGVFETYTVE 300 EENKDYKNEV DILEEILNIA SASQENNAIA VNPIAGTPSD YTDIWLGSFP NLEDNLSHNV 360 NYHGHGSEDV HAKIESQELC NAMEASTVHG KSYGLVGESR SIEVRNTDRI SSCRVQPRKN 420 GLPQDAREDR SKLNNIMEEP LIRSKQSEEY QYRTLLVEAI SGDKVDCTGG EAHYDQLKGF 480 NDSEHMTSIL SNYTNGYVAD NMKMVVAKEQ KVTTQSFHGE NDRDTTNKSD FDILEQVEVS 540 HGFSISNCQH ATTFFQRVEP SRLLTVHINE LGPTDFEREG LEATQGFLCS PNMKSVVSDR 600 SEILNEFQHS KGWWLTSMED KRAPELKSFT SLRSPCDAYQ WIELEVVSME PMATSHKVIA 660 RDCYMNFLSS TKDTAAILTT SRPPQPEDPI VIKPRKKCGP VFQRIKIFLG IMAVIMSRMS 720 FGEELTPASA TDGHSSKVRY WKKRRNERHE FDTTKDSKDQ SDKSIISRRG LSNLLKEKLI 780 PKCLGKLLPL FPIALGMYAC WTHPYHLFF*

Sequence ? help Back to Top

Protein Sequence Length: 810 aa Download sequence Send to blast

MAPVTLPPGF RFHPTDEELV AYYLKRKIHG WKIDLEIIPE VDLYKCEPWD LPDKSFLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATQAGYWK ATGKDRKINS QKRSVGMKKT LVYYRGRAPH  120
GLRTNWVMHE YRLDEKECVA VSGLQDAYAL CRIFKKSGTI PKIGEQYGGG AQNQNQWVQN  180
DYASGMELSE GKGDDYDNND YRFPSDNSSS EIIQCAQVDR ATRDGRWTQF LSDEVVSSMC  240
QFPNSMNSSF VPSKAEVAME CALLQNRLSW PPMEIEEFPQ VGTSNTMFLE PGVFETYTVE  300
EENKDYKNEV DILEEILNIA SASQENNAIA VNPIAGTPSD YTDIWLGSFP NLEDNLSHNV  360
NYHGHGSEDV HAKIESQELC NAMEASTVHG KSYGLVGESR SIEVRNTDRI SSCRVQPRKN  420
GLPQDAREDR SKLNNIMEEP LIRSKQSEEY QYRTLLVEAI SGDKVDCTGG EAHYDQLKGF  480
NDSEHMTSIL SNYTNGYVAD NMKMVVAKEQ KVTTQSFHGE NDRDTTNKSD FDILEQVEVS  540
HGFSISNCQH ATTFFQRVEP SRLLTVHINE LGPTDFEREG LEATQGFLCS PNMKSVVSDR  600
SEILNEFQHS KGWWLTSMED KRAPELKSFT SLRSPCDAYQ WIELEVVSME PMATSHKVIA  660
RDCYMNFLSS TKDTAAILTT SRPPQPEDPI VIKPRKKCGP VFQRIKIFLG IMAVIMSRMS  720
FGEELTPASA TDGHSSKVRY WKKRRNERHE FDTTKDSKDQ SDKSIISRRG LSNLLKEKLI  780
PKCLGKLLPL FPIALGMYAC WTHPYHLFF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-55	1	162	15	174	NAC domain-containing protein 19
3swm_B	4e-55	1	162	15	174	NAC domain-containing protein 19
3swm_C	4e-55	1	162	15	174	NAC domain-containing protein 19
3swm_D	4e-55	1	162	15	174	NAC domain-containing protein 19
3swp_A	4e-55	1	162	15	174	NAC domain-containing protein 19
3swp_B	4e-55	1	162	15	174	NAC domain-containing protein 19
3swp_C	4e-55	1	162	15	174	NAC domain-containing protein 19
3swp_D	4e-55	1	162	15	174	NAC domain-containing protein 19
4dul_A	4e-55	1	162	12	171	NAC domain-containing protein 19
4dul_B	4e-55	1	162	12	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020529946.1	0.0	uncharacterized protein LOC18445393
TrEMBL	U5CUT8	0.0	U5CUT8_AMBTC; Uncharacterized protein
STRING	ERN17061	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP8717	10	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-118	NAC domain containing protein 28

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00044.30

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]