PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00043.22

Common Name

AMTR_s00043p00128910

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

bHLH

Protein Properties

Length: 437aa MW: 48131.7 Da PI: 6.882

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00043.22	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.8	1.4e-06	323	362	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri + L +l+P++ K++ a++L +A +YI+ L evm_27.model.AmTr_v1.0_scaffold00043.22 323 RQRRKRISELTRSLEKLMPWD-----SKMDTATMLGEAYKYIRFL 362 9*****************8.....7**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.27E-10	313	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.017	313	362	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-4	319	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-8	320	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.03E-6	322	367	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MFSLVKSPYA MKRKARASFR QPLEQNPAVR LPDSDYNLEN GDEGSALPHQ GKQGFHGQKK 60 QSSQAQRIIR AISPENPNPR TMFKTKTPKD EPVEDYGDLE NHAIGLSDLL FQNLTNPSSG 120 ELINPFNGEK DQTMIESLNH LQFQALPDLL SLESASETLV TSYSPIPAPL FVSSNHFSAS 180 SSGHETHQAN LSNASSPSVV CDSQSSIKRA EEEEASHKRL RSCSCYTLEH VLQHFIEGVS 240 SKTSQNQSVH SSADSTPSLS PTHSNPVFPL GPSSLGLASS ETSMNHYWAS GPSTMELPSS 300 ATHYTPNFSS SSSSMAPQSF YARQRRKRIS ELTRSLEKLM PWDSKMDTAT MLGEAYKYIR 360 FLKAQISVLK SMPSNSDVKT DCGEGNGEYS DFGCLSRQQM LQVLMGSSGV QRKLYSEGKC 420 VISIEQAMQF QESYMK*

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MFSLVKSPYA MKRKARASFR QPLEQNPAVR LPDSDYNLEN GDEGSALPHQ GKQGFHGQKK  60
QSSQAQRIIR AISPENPNPR TMFKTKTPKD EPVEDYGDLE NHAIGLSDLL FQNLTNPSSG  120
ELINPFNGEK DQTMIESLNH LQFQALPDLL SLESASETLV TSYSPIPAPL FVSSNHFSAS  180
SSGHETHQAN LSNASSPSVV CDSQSSIKRA EEEEASHKRL RSCSCYTLEH VLQHFIEGVS  240
SKTSQNQSVH SSADSTPSLS PTHSNPVFPL GPSSLGLASS ETSMNHYWAS GPSTMELPSS  300
ATHYTPNFSS SSSSMAPQSF YARQRRKRIS ELTRSLEKLM PWDSKMDTAT MLGEAYKYIR  360
FLKAQISVLK SMPSNSDVKT DCGEGNGEYS DFGCLSRQQM LQVLMGSSGV QRKLYSEGKC  420
VISIEQAMQF QESYMK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020527195.1	0.0	uncharacterized protein LOC110007837
TrEMBL	W1PXW7	0.0	W1PXW7_AMBTC; Uncharacterized protein
STRING	ERN12736	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP11266	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	2e-23	bHLH family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00043.22

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]