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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00042.36 | ||||||||
Common Name | AMTR_s00042p00142880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | C2H2 | ||||||||
Protein Properties | Length: 226aa MW: 25195.9 Da PI: 7.9789 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00024 | 185 | 205 | 1 | 21 |
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 y+C C k+F+++ L H+ evm_27.model.AmTr_v1.0_scaffold00042.36 185 YECRVCRKRFKSSPALGGHMG 205 99***********99999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.74E-8 | 141 | 207 | No hit | No description |
SMART | SM00355 | 0.96 | 141 | 163 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.0E-5 | 141 | 165 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 143 | 163 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.369 | 185 | 207 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.036 | 185 | 207 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 9.5E-6 | 185 | 209 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 187 | 207 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MFGQPRASFS HGVANPLDLE DRLYTDEPIE PLSLTLSLSP YQLNPTILDH LSSSVSLSSY 60 KDNHTTSQPI STTLTLFLPQ QDSSHSALFT DSSTCKQYFG NHTQDLKDVG EYNPITHYFG 120 IGDTQDSQKN GNHVQDFGNG HRCNMCRKSF TSGQAHGGHM TIHREVLSKL NSEQKKNESN 180 GRRFYECRVC RKRFKSSPAL GGHMGAHRSP FNIEASSSKS FFPFM* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | W1P7L6 | 1e-167 | W1P7L6_AMBTC; Uncharacterized protein | ||||
STRING | ERN03586 | 1e-167 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 4e-13 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00042.36 |
Publications ? help Back to Top | |||
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