PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00041.167
Common NameAMTR_s00041p00193340
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 329aa    MW: 36885.1 Da    PI: 6.2496
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00041.167genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.3e-094796154
                                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                       HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                              r++ +  rE+ RRdr+N+ f eL + l ++     +K++Ka+iL  +++ +k+L
  evm_27.model.AmTr_v1.0_scaffold00041.167 47 RKVQKADREKLRRDRLNEQFLELGSALDPD----RPKNDKATILADTIQMLKDL 96
                                              5677889********************997....79****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.1164696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-1346116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-1146117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-747100No hitNo description
PfamPF000102.4E-74796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-752102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MVKNSIKAVT EVLVQWMNWT AENVTWEVCH RYNKRAESDV KDSITARKVQ KADREKLRRD  60
RLNEQFLELG SALDPDRPKN DKATILADTI QMLKDLTSQV NKFKSEYHSL SEESHELLQE  120
KNELREEKAT LKSDIESLQF QYQQRVRVIF PWASMDPSMV MGAPSPFPYP MPVPIPPGHH  180
IPLHPSLQPF PFFGNQNPES IPNPYLAFPP YPAPANSHVE RPSAQYGTPP LSHPSTTRFS  240
QQEPRSKLSN SQQGSNANRS QDSNEIGTEL ELKTPGSDPN PEMSEEREKS KQGLSQCVIE  300
KSCSSKCSSH GLQGSTSNSL GEGSVSDD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011626091.10.0transcription factor bHLH121 isoform X1
SwissprotQ9LT232e-75BH121_ARATH; Transcription factor bHLH121
TrEMBLW1PZE30.0W1PZE3_AMBTC; Uncharacterized protein
STRINGERN134310.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP34011425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.25e-55bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]