PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00040.27
Common NameAMTR_s00040p00057740
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 319aa    MW: 35297.5 Da    PI: 6.5489
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00040.27genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.51.6e-14237284453
                                              XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                   bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                                               +r+rr++kNRe+A rsR+RK+a++ eLe+ v +Le+eN +L+  +++ +
  evm_27.model.AmTr_v1.0_scaffold00040.27 237 QQRQRRMIKNRESAARSRERKQAYTVELETLVTQLEEENAQLQ--AQQVE 284
                                              58****************************************8..33333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.0E-13229295No hitNo description
SMARTSM003385.8E-11234295IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.795236281IPR004827Basic-leucine zipper domain
PfamPF001707.0E-13237293IPR004827Basic-leucine zipper domain
CDDcd147074.77E-19238292No hitNo description
SuperFamilySSF579596.25E-10239281No hitNo description
PROSITE patternPS000360241256IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MASKVMASSN STTNSDLNRQ ASIYSLTIAE LQNSNKGLGS MSMDDLLRNI WTAEESQAMA  60
AALAGNQPDS GQLAGNMSDS GQVMMNSGSF PHQNNLSLPK QVANKTVEEV WRELASSSAT  120
DQRGERMVYK EPTFGEMTLE DFLAKAGIVR EENQAQGVCE PSDWRRFGVK GDEMVSQQSM  180
FGDGVLGVQG QFQRLGGLEE GGLGSNNNNG LGLGLGHEGS SRGKRRAVHE PVDKVAQQRQ  240
RRMIKNRESA ARSRERKQAY TVELETLVTQ LEEENAQLQA QQVEENRKRR EELMKVLIPV  300
DEMPRPPRML RRTRSMHL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00409DAPTransfer from AT3G56850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020527287.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 6
TrEMBLW1PY530.0W1PY53_AMBTC; Uncharacterized protein
STRINGERN129840.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8662715
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41070.36e-25bZIP family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]