PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00040.222

Common Name

AMTR_s00040p00210200, LOC18441417

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

C2H2

Protein Properties

Length: 1174aa MW: 127177 Da PI: 6.751

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00040.222	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	3.8e-05	1021	1043	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg +F+r+++L +H+ H evm_27.model.AmTr_v1.0_scaffold00040.222 1021 HRCSACGLRFNRQEELSKHLEWH 1043 79*****************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51391	33.432	87	215	IPR006569	CID domain
Gene3D	G3DSA:1.25.40.90	6.8E-43	88	213	IPR008942	ENTH/VHS
SMART	SM00582	1.1E-38	90	212	IPR006569	CID domain
SuperFamily	SSF48464	3.14E-37	90	211	IPR008942	ENTH/VHS
CDD	cd03562	3.26E-37	94	203	No hit	No description
Pfam	PF04818	6.4E-9	143	196	IPR006903	RNA polymerase II-binding domain
Gene3D	G3DSA:3.30.160.60	6.5E-4	1020	1045	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.596	1021	1048	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	1023	1043	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1174 aa Download sequence Send to blast
MEMDSSRRPT DRSILKKPRL IEGVERDRGP NGLVERERPG LRGTSGPLLP RYRLDREGER 60 GRTEANEETD NPRENSGRGA QFQQQHHLQE LLSQYKTALA ELTFNSKPII TNLTIIAGEN 120 THAAKWIAAT VCGNILEVPS EQKLPSLYLL DSIVKNIGGD YIKYFAARLP DVFCKAYRQV 180 DPSIHAGMHH LFRTWKGVFP PAPLQIIEKQ LDFPPATNSS SSGAPASRPD SQRPPHSIHV 240 NPKYLEARQR LQQSSRAKGI SADNNGVSLA DHMESSDRAM TSGSPKQWPD LPVKNIQRPQ 300 SGEPLSESLF GKKPSTGYGD YKFASDRARR SDIRTVRSIE RVVEKEEGLD RGRYGGVEGT 360 TTNPPFGPKN GHSMPQLPQR GLTDAYGSHR PSRPAHVVPQ LPPPQDVAGK SGRGGISRNW 420 KNSEEEEYMW DDMNSRLTEH GGADRSSKDP WVSDDAGNPT SMTRGKWMPS ESDPLDANWN 480 SLETSSRLEK PIVGEDGMSL KREPDDPQLQ SHGQQDIDPR SRRDTSAESP SQGGGPSEFE 540 RRLLSGWPPQ QNMSMSQLRP RIHPVDGLIQ TGLPTSLASS SFGKAGNQSN LGMPLGSIPS 600 SFGPTSQMIP GSSGLFGHQR QQPQRPPSPS SQLPFHHLPY SSQIPLHQPP SLHDLDPMQQ 660 AQAQSFTQPG QKGSQAINQS TQNQDSFSPK RHNSSILQSL QAPLQIQPPL RFHGASSSLL 720 PPSKQGHHQL HFGQPPNLEI PHAQPPTFGP PRTSGYSGAG LPKNLPVEPQ GQSSTETLLA 780 TILQSGILPL ESTPSNTQPL STSSSAIPRH SDSMSTPSNL NIQPPLPTGP PPIPQTSSLP 840 VTSVSSLLGP NPLGNMSSLS TQPVGMLQPP LPPGPPPASS IAGSSQASST ASGVSNQLSG 900 LLSSLVAKGL ISAPTSESSN PPVSHAPTEV QHQTAVVATS ATSMLSSRSL VSSTPPTSIP 960 IDEPELWVST SISSAPPQAP RVDTKDPIAI EPNLIGIEFK PEVIRERHPS VISGLFDAMP 1020 HRCSACGLRF NRQEELSKHL EWHASKNHEQ SSGKRVLRNW YVSLRNWVEG DVGPSTGDAS 1080 FPLDEKLSNV EKEEPVVPAD ESQCICILCG EPFEDYYSHE RDEWMYKGAT YMSGNGGDGS 1140 SSPVSIVHVN CISKGAADDL LEAENDNVDK ADG*

Sequence ? help Back to Top

Protein Sequence Length: 1174 aa Download sequence Send to blast

MEMDSSRRPT DRSILKKPRL IEGVERDRGP NGLVERERPG LRGTSGPLLP RYRLDREGER  60
GRTEANEETD NPRENSGRGA QFQQQHHLQE LLSQYKTALA ELTFNSKPII TNLTIIAGEN  120
THAAKWIAAT VCGNILEVPS EQKLPSLYLL DSIVKNIGGD YIKYFAARLP DVFCKAYRQV  180
DPSIHAGMHH LFRTWKGVFP PAPLQIIEKQ LDFPPATNSS SSGAPASRPD SQRPPHSIHV  240
NPKYLEARQR LQQSSRAKGI SADNNGVSLA DHMESSDRAM TSGSPKQWPD LPVKNIQRPQ  300
SGEPLSESLF GKKPSTGYGD YKFASDRARR SDIRTVRSIE RVVEKEEGLD RGRYGGVEGT  360
TTNPPFGPKN GHSMPQLPQR GLTDAYGSHR PSRPAHVVPQ LPPPQDVAGK SGRGGISRNW  420
KNSEEEEYMW DDMNSRLTEH GGADRSSKDP WVSDDAGNPT SMTRGKWMPS ESDPLDANWN  480
SLETSSRLEK PIVGEDGMSL KREPDDPQLQ SHGQQDIDPR SRRDTSAESP SQGGGPSEFE  540
RRLLSGWPPQ QNMSMSQLRP RIHPVDGLIQ TGLPTSLASS SFGKAGNQSN LGMPLGSIPS  600
SFGPTSQMIP GSSGLFGHQR QQPQRPPSPS SQLPFHHLPY SSQIPLHQPP SLHDLDPMQQ  660
AQAQSFTQPG QKGSQAINQS TQNQDSFSPK RHNSSILQSL QAPLQIQPPL RFHGASSSLL  720
PPSKQGHHQL HFGQPPNLEI PHAQPPTFGP PRTSGYSGAG LPKNLPVEPQ GQSSTETLLA  780
TILQSGILPL ESTPSNTQPL STSSSAIPRH SDSMSTPSNL NIQPPLPTGP PPIPQTSSLP  840
VTSVSSLLGP NPLGNMSSLS TQPVGMLQPP LPPGPPPASS IAGSSQASST ASGVSNQLSG  900
LLSSLVAKGL ISAPTSESSN PPVSHAPTEV QHQTAVVATS ATSMLSSRSL VSSTPPTSIP  960
IDEPELWVST SISSAPPQAP RVDTKDPIAI EPNLIGIEFK PEVIRERHPS VISGLFDAMP  1020
HRCSACGLRF NRQEELSKHL EWHASKNHEQ SSGKRVLRNW YVSLRNWVEG DVGPSTGDAS  1080
FPLDEKLSNV EKEEPVVPAD ESQCICILCG EPFEDYYSHE RDEWMYKGAT YMSGNGGDGS  1140
SSPVSIVHVN CISKGAADDL LEAENDNVDK ADG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1sz9_A	2e-16	86	195	3	112	PCF11 protein
1sz9_B	2e-16	86	195	3	112	PCF11 protein
1sz9_C	2e-16	86	195	3	112	PCF11 protein
1sza_A	2e-16	86	195	3	112	PCF11 protein
1sza_B	2e-16	86	195	3	112	PCF11 protein
1sza_C	2e-16	86	195	3	112	PCF11 protein
2bf0_X	2e-16	86	195	8	117	PCF11
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006851712.1	0.0	uncharacterized protein LOC18441417 isoform X2
TrEMBL	W1PYN4	0.0	W1PYN4_AMBTC; Uncharacterized protein
STRING	ERN13179	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5094	3	3

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00040.222
Entrez Gene	18441417

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]